Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_09760
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Entry
RLEG3_09760 CDS
T03009
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG3_09760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlb03400
]
RLEG3_09760
Enzymes [BR:
rlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG3_09760
DNA repair and recombination proteins [BR:
rlb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG3_09760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AHF87438
LinkDB
All DBs
Position
unnamed:complement(623732..626377)
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AA seq
881 aa
AA seq
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MASDKLSTYRSKRDFQKTAEPSGEKRLAGSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFILEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENNGQAILEEN
DTSVASGRTMEMIAAGKGRKPKPFMIDGGDIQADAVWDSNHGLAAEERKEDAGGGRKSKP
ATKVDLPDFIAPQLCQTLERPPAGTGWIHEIKFDGYRIQMRVLDGEATLKTRKGLDWTDK
YPEIAEAASALPDAIIDGEICALDDTGAPDFAALQAALSEGKTRELVYFAFDLLYQGGVD
LRSLPLVERKARLQSLLSDAGNDPRIRFVEHFETGGDAVLRSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRSGHEVVIGAYAKTNGKFRSLLVGVYHGDHFVYVGRVGTGYGAKKVE
TLLPKLKAIETAKSPFTGIGAPKKEAEVTWLKPELVAEIEFAGWTADGIVRQAAFKGLRE
DKPAKEVKAERPAKPGQTDVPQPAVQAKARPVRRKSAKAEVMGVLISNPDKPLWPDANDG
EAVTKEELARYYEAVGSWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGLISFCKTTGGKGLHVVTPLAVNKRKPLSWAEAKGFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWEDYSDGKRSLEQAIKRLGKVSEVA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaaactatcgacgtatcgatcgaagcgcgactttcaaaaaacggccgag
cctagcggtgaaaaacggctcgcgggcagtaaccgccgtcgcttcgtcatccagaaacac
gacgccacccggttgcattacgatctgagactcgagctcgatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctctagacccgcacgacaagcggctggcagttgaggtcgag
gatcatccgctcgactacggcgatttcgaaggcaccattccgaaaggtcagtatggcggt
gggacggtcatgctctgggatcggggctattgggaaccggaaggaaagaagagccccgag
caggcgctcgccaagggtgactttaagttcatcttggaaggcaaacgcctgcacggcagc
ttcgtactggtgcgcatgcgcaatgatcgcaacggcggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctccgtcgaaaacaatggccaagccatcctcgaggagaac
gacacctctgtcgcctccggccgaaccatggagatgattgccgccggcaagggacgaaag
cccaagcctttcatgattgatggtggcgacattcaggccgatgccgtctgggacagcaat
cacggactggctgccgaagagcgaaaagaggacgccggaggcggtcggaaatcgaaaccg
gccacaaaggtcgatcttccggatttcattgcgccacagctctgccagacactggaacgc
cctccggccggcaccggctggattcacgagatcaagttcgacggttaccggatccagatg
cgcgtgctggatggtgaggcgacgctgaagaccaggaaagggctcgactggacggacaaa
tatcccgagatcgccgaggcggcatcggcattgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgatactggcgctcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagacccgcgaactcgtctatttcgccttcgatctactctatcagggaggcgtggat
ttgcgatctctgccactcgtcgagcgcaaggcgcggcttcaaagccttctgtccgacgcc
ggcaacgatccgcgcatccgtttcgtcgagcatttcgagactggcggcgatgcagttctc
cggtctgcctgcaagctctcactggaaggcatcgtctcgaaagaagcggatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcgaaatgccgctccggccacgaggtggtg
atcggcgcctatgccaagaccaacgggaaattccgatccctgctggtcggcgtctatcac
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgcgaagaaagtggaa
acgctgctgccgaagttgaaagcgatcgagacggcgaaatcgccgttcaccggcattggc
gcgccgaagaaggaggccgaggtcacctggctgaaacccgagctcgtggcggaaatcgaa
ttcgcaggctggaccgccgacggcattgtccggcaggcggccttcaagggactgcgggaa
gacaagccggcgaaagaggtcaaggctgaacggccggcgaagcccgggcaaactgacgta
ccgcagccggcggtgcaggcgaaggccaggcccgtccgccgaaaaagcgccaaggccgag
gtcatgggggtgctgatttcaaacccggacaagccgctatggccggatgcgaatgacggc
gaagcggtcaccaaggaagagctggcccgctactacgaagccgtcggttcctggctgatc
gagcacatcaagggacggccgtgttccatcatccgcgcgcccgacgggatcggcggcgag
cagtttttccagcgccatgcgatgcccggcacctcgaaccttctcgaactggtcaaggtc
tttggcgataaaaagccctatctgcaaatcgaccgggtcgaaggcttggccgccgtcgcg
cagatcggcgcggtcgagctgcacccctggaattgcgaaccgcatcagcccgaggtgccc
gggcgtctcgtcttcgaccttgatccaggtccggacgtgccgttctccgctgtggtttcg
gcggcccgggaaatgcgggaccgtctcgacgcgctgggcctgatcagcttttgcaagacg
actggcggcaagggtctgcacgttgtcactccgctcgcggtcaacaagcgcaagccgctt
tcgtgggctgaagcgaagggttttgcgcacgatgtgtgccagcagatggcgcgcgacaat
cccgatctctatctgatcaaaatgacgaagagcctgaggaacggccggatcttcctcgac
tatctgcgcaacgaccggatggcgacggcggtggcgcctttgtcaccgcgcgcacggccg
ggcgccaccgtctcgatgccactgacctggacgcaggtcaaatcggatctggaccccaag
cgcttcactatccgcaccgttccggccttgctgtcaaaatcttccgcctgggaggattac
agtgatggcaagcgttcgctggaacaggcgatcaagcgcctcggcaaagtctccgaagtg
gcttga
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