Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_18615
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Entry
RLEG3_18615 CDS
T03009
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG3_18615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlb03400
]
RLEG3_18615
Enzymes [BR:
rlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG3_18615
DNA repair and recombination proteins [BR:
rlb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG3_18615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHF83711
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All DBs
Position
1693456..1694502
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AA seq
348 aa
AA seq
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MTKPPKPKPLLQDTDKPVRSRPRKPRDPAQPNLLLDPMPNRIEPCLAVLKARPPKGDDWV
YEIKWDGYRLSVHIEPTRIRILTRGGHDWTDRFPAIKQAALWLPVGTAILDGEAVVLDEQ
GRSDFGLLQQSLGGRGGKKSSSDAIFMAFDLLYFDGHDLRGSEHDMRRHLLEDLVPAREQ
GDIRLSEEIEADGDQLLASACEHGLEGIIAKRRDAPYRSGRLGDWLKIKCVQSDSFVIVG
FERSTVARAGIGRLLLAARKGKELVYVGGVGTGFKESTAWQLRSMMDKIKRKTPAIKYVG
RRKNVVWLQPTLIAEIEYRAWTDDGKLRHSSYKGLREVQDNAEVYEVV
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagccgccgaaacccaaaccgctcctgcaggatactgacaagccggttcgatcc
cgcccgcgcaagccgcgagatccagcgcagccgaaccttctcctcgatcctatgccaaat
cgcattgagccgtgtcttgcggttctgaaagcaaggccgccgaagggcgacgactgggtc
tatgagatcaagtgggatggctatcgcctgtcggttcatatcgagccgacgcgcattcgc
atcctgacgcgcggcggccacgactggacggatcgtttcccggcgatcaaacaggctgca
ttgtggcttcctgttggcacggcaatcctcgacggagaggcggtggttctcgacgagcag
ggccggtcggatttcggcctgctgcaacaatccctcggcgggcggggcggcaagaagagc
tcaagcgacgccatcttcatggcttttgatctgctctatttcgacggccacgatctcaga
ggctccgaacacgacatgcgccggcatttactcgaggatctggtgccggccagagagcag
ggcgatatccggctttccgaggagatcgaggccgacggtgatcagttgctggcgagcgcc
tgcgaacacgggttggaaggcatcatcgccaagcgccgggacgcgccttatcgctccggc
cggctcggcgactggctgaaaatcaagtgcgtccagagcgacagctttgtgatcgtcggt
tttgaacgatccacggtcgcgcgtgcagggatcggtcggcttctgcttgccgcgcgcaag
ggcaaggagctggtctacgtcggcggggtagggaccggcttcaaggaaagcacggcgtgg
cagctgcgcagcatgatggataagatcaaacgaaagacgccggcgatcaaatatgtcggc
cggcggaagaatgtcgtgtggctgcagccgacgctgatcgcagagattgagtacagggca
tggacggatgacggcaagctgcggcactcatcctataagggactgcgggaggtgcaggat
aacgccgaggtttacgaggtggtctaa
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