Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_28000
Help
Entry
RLEG3_28000 CDS
T03009
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG3_28000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlb03400
]
RLEG3_28000
Enzymes [BR:
rlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG3_28000
DNA repair and recombination proteins [BR:
rlb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG3_28000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHF85429
LinkDB
All DBs
Position
3536310..3537374
Genome browser
AA seq
354 aa
AA seq
DB search
MPKPPRSKPLLRDTEAPVRSRPRGKRNPAQPQLLFDPMPERVEPALAQLKSHPPKGNEWS
WELKWDGYRLAVHIEPQGIRILTRGGHDWTHRFPAIAEAARALGPATMIIDGEAVVLDEE
GRPVFGLLQESLGASGKQAGNRASNAVLYAFDLVYLDGHDLRGVEYRSRRHLLEDTLNAP
GNDQVGAVRLSETLDAEPAVLLEHICRLGLEGIVGKHLDRPYRSGRTGDWVKVKCVQSEA
FFIVGYEKSSASPAGFGSLVLAAYRGADLVHVGSVGTGFRQAEIIRLRKMLDTLRWKRKQ
PPLPYSGSADVIWVQPTLIAEIEFRAWSTDGKLRHPSYKGLRERQDNADVFRLD
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcctccgagatcaaaaccccttcttcgtgacaccgaggccccggtccgttcc
cggccgcgaggcaagcgcaatccagcccaaccacagctgctgttcgatcccatgcccgag
cgcgtcgagcccgcgctggcgcaattgaagtcccatcccccaaaaggaaacgagtggagc
tgggagctgaaatgggatggctatcgccttgccgttcacatcgagccccaagggatccgg
atcctcacccgcggcggccatgactggacgcatcggtttccggcaatcgcagaggccgcc
cgagcgctcgggcccgcgacgatgatcatcgatggcgaagccgtcgtgctcgacgaagag
ggccggcccgttttcgggctattgcaggaatcgctcggcgcatccgggaagcaagccggc
aaccgtgcttccaacgccgtcctctacgctttcgatcttgtttatctggacgggcacgat
ctgcgcggtgtcgaataccgttcgcgccgacaccttctcgaggacacgttaaacgcccca
gggaatgaccaggtcggcgccgtcaggctatcggaaacactcgatgccgaaccagccgtc
ctgcttgagcatatctgccgtctcggcctggaaggcatcgtcggcaagcacctcgaccgg
ccttatcgttccggccggactggggattgggtcaaagtcaaatgcgtccagagcgaggca
ttcttcattgtcggttatgagaagtcgtcagcgtcccctgccggcttcggctcgttggtg
cttgccgcctaccgcggtgccgacctcgtccacgtcggaagcgtcggcacgggcttcagg
caagccgaaatcatcaggttgcggaagatgctggacacgctgcgatggaagcgaaagcag
ccgcccctgccctattccggaagtgccgacgtcatctgggtccagccgacactgatcgcc
gagatcgagtttcgcgcctggtcgacagacgggaaactccgccatccatcctacaaaggc
ttgcgagaacgccaggacaatgccgacgtcttccggctcgactag
DBGET
integrated database retrieval system
