Rhizobium johnstonii: RL3301
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Entry
RL3301 CDS
T00402
Symbol
ddlB
Name
(GenBank) putative D-alanine--D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rle
Rhizobium johnstonii
Pathway
rle00470
D-Amino acid metabolism
rle00550
Peptidoglycan biosynthesis
rle01100
Metabolic pathways
rle01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RL3301 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RL3301 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
RL3301 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
RL3301 (ddlB)
Enzymes [BR:
rle01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
RL3301 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
Precursor biosynthesis
Amino acid ligase
RL3301 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
GARS_A
ATP-grasp_3
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
CAK08788
RhizoBase:
RL3301
UniProt:
Q1ME39
LinkDB
All DBs
Position
complement(3460336..3461262)
Genome browser
AA seq
308 aa
AA seq
DB search
MSRKHVAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVF
NALHGPFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNR
FAFPSTHPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGR
ELTCGVMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAH
QAIGCRGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWM
VEDASCLR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaagcatgtcgcggtcctgatgggcggattttcctcggaaaggcctgtcagc
ctttcctcgggaaaggcttgcgcagaagccctcgaggcggagggattcgacgtgacgcgc
atcgacgtggcgcgcgacgtttccgagaaactcgctgcgctgaagcccgatgtcgtcttc
aatgcgcttcacggcccgttcggcgaggacggcaccattcagggcatcctcgaatatctc
gaaatcccctatacgcattcgggcgtgcttgcctcggcgctggcgatggacaaggacaag
gcgaagctcgttgccgccgctgccggcattacggtcgccgaatcgcaggtggtcaaccgt
ttcgcctttccctcgacgcatccgatgaagccgccctatgtggtgaaacccgtccgcgaa
gggtcgagcttcggcgtcgtcatcgtcaccgaagatcaggcgcatccgccacagatcgtc
agttcgcccgaatggcgctacggcgaagaggtgatcgtcgagcgctatgtttacggtcgc
gaactcacctgcggtgtcatgggtgaaactcccctcggcgtcacggaagtggtgccgcag
ggacacaatttttatgattacgactccaagtatgccgcgggcggttcaaaacacgtcatc
cccgcgaaaatttcaccgaatatttaccaaaaaatacaaacattgtccctaagggcgcat
caggcaatcggttgtcgcggcgtcagtcggtccgactttcgttacgacgatcgtttctcc
gaagacggcgaaatcatctggctggaggtcaatacccagccaggcatgactccaacctcg
ctcgtgcccgaaatggccggtcatgccggttattcatttggtcagtttctccggtggatg
gtggaggacgcgtcttgtttgcgttga
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