Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_5341
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Entry
Rleg_5341 CDS
T00926
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg_5341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlg03400
]
Rleg_5341
Enzymes [BR:
rlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg_5341
DNA repair and recombination proteins [BR:
rlg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg_5341
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ACS59544
UniProt:
C6B636
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All DBs
Position
pR132501:complement(746891..749536)
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AA seq
881 aa
AA seq
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MASDKLSTYRSKRDFKKTDEPSGEKRLSRSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENKGEAVLEEN
DTSVASGRTMEMIAGGKGRKPRPFMIEGGDVQADAVWDSNHGLAAEERKDDTGGGRKSKP
ATKVDLPDFIAPQLCRTLERPPAGTGWLHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YPEIAEAASTLPDAIIDGEICALDDHGAPDFAALQAALSEGKTGELVYFAFDLLYEGGED
VRSLPLVERKARLQSLLSDAGDDPRVRFVEHFDTGGDAVLQSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRSGHEVVIGAYAQTNGKFRSLLVGVYHGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETAKSPFTGIGAPKKEAEVIWLKPELVAEIEFAGWTADGIVRQAAFKGLRE
DKPAIEVKAERPAKPAQTDVPQPTVEAKTRPVRKKGAKAEVMGVLISNPDKPLWPDANDG
KTVTKEDLACYYEAVGSWLIEHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRIEGLAAVAQIGAVELHPWNCEPRQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGMISFCKTTGGKGLHVVTPLAINKRKPLSWAEAKGFAHDVCQQMARDN
PELYLIKMTKSLRDGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPTLLSKSSAWEDYGDGKRPLEQAIKRLGKVSKVA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaaactatcgacctatcggtcgaagcgcgactttaaaaaaacggatgag
ccgagcggtgaaaaacgcctctcgcgcagcaatcgccgtcgcttcgtcatccagaaacat
gatgccacccggctgcactacgacctgcggctcgagctggatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctctcgacccgcacgacaagcggctggcagttgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcaccattccgaagggccagtatggcggt
gggacggtcatgctctgggaccggggctattgggaaccggaaggaaagaagagccccgag
caggccctcgccaagggtgacttcaagttcaccttggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacgggggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctccgtcgaaaacaaaggcgaagcggtcctcgaggagaac
gacacctctgtcgcctccggccgaaccatggagatgattgccggcggcaagggacgaaag
cccaggcctttcatgatcgagggtggcgacgttcaggctgatgccgtttgggacagcaat
cacggactggctgccgaagagcgaaaagacgacaccggaggcggtcggaaatcgaaaccg
gccacaaaggtcgatctgccggatttcattgcgccgcagctctgccggacactggaacgc
cctccggcaggcactggctggcttcacgagatcaaattcgacggttaccggatccagatg
cgagtgctggatggcgaggcgacgctgaagaccaggaaagggctcgactggacggcaaaa
tatcccgagatcgccgaggcggcatcgacactgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgatcatggcgctcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagaccggcgagctcgtctatttcgccttcgatcttctctatgaaggtggcgaggat
gtgcgatcgctgccgctcgtcgagcgcaaggcgcggcttcaaagccttctgtccgacgcc
ggcgatgatccgcgcgtccgtttcgtcgagcatttcgacaccggcggtgatgcagttctc
cagtctgcctgcaagctttcactggaaggcatcgtctcgaaagaggcggatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcgaaatgccgctccggccacgaggtggtg
atcggcgcctatgcccagaccaacgggaaattccgatccctgctggtcggcgtctaccac
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgcgaagaaagtggaa
acgctgcttccgaagttgaaagcgctcgagacggcgaaatcgccgttcaccggcatcggc
gcgccgaagaaggaggccgaggtcatctggctaaaacccgagctagtggcggaaatcgaa
ttcgcaggctggaccgcagacggcattgtccggcaggcggccttcaagggactgcgggaa
gacaagccggccatagaggtcaaggccgaacggccggcaaagcccgcgcaaactgacgtg
ccacagccgacggtggaggcgaaaaccagacccgtccgcaaaaaaggcgccaaggccgag
gtcatgggggtgctgatctccaacccggacaagccgctgtggccggatgccaatgacggc
aaaaccgttaccaaggaggacctggcctgctactacgaagccgtcggttcgtggctgatc
gagcacatcaagggacgtccgtgttcgatcatccgtacacccgacgggatcggcggcgag
cagttttttcagcgtcatgcgatgcccggcacctcgaatcttctcgaattggtcaaggtt
ttcggcgacaaaaaaccatacctgcagatcgaccgtatcgaaggccttgctgccgtcgcg
cagatcggcgccgtcgagctgcatccctggaattgcgaaccgcgtcagcctgaggtgccc
ggccggctcgtcttcgaccttgatccaggtccggatgtgcccttctccgcggtcgtttcg
gcggcccgcgaaatgcgggaccgtctcgacgcgctgggaatgatcagcttttgcaagacc
actgggggcaagggtctgcacgtcgtcactccgcttgcgatcaacaaacgcaagccgctt
tcgtgggccgaagcgaagggatttgcccacgacgtctgccagcagatggcacgcgacaat
cccgaactctatctgatcaagatgacgaagagcctgagggatggccggatcttcctggac
tatctgcgcaacgatcggatggcgacggcggttgcacctttgtcgccgcgcgcccggccg
ggtgccaccgtctcgatgccgctgacctggacccaggtcaaatctgatcttgacccgaag
cgcttcaccattcgcaccgtcccgacgctgctgtcgaagtcctctgcctgggaggattac
ggcgatggcaagcgtccgctggaacaggcgatcaagcggctcggcaaagtctccaaagtg
gcttga
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