Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_5730
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Entry
Rleg2_5730 CDS
T00779
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlt
Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg2_5730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlt03400
]
Rleg2_5730
Enzymes [BR:
rlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg2_5730
DNA repair and recombination proteins [BR:
rlt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg2_5730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
GPAT_C
HetR_C
Motif
Other DBs
NCBI-ProteinID:
ACI58905
UniProt:
B6A3C2
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All DBs
Position
pRLG202:complement(129691..130743)
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AA seq
350 aa
AA seq
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MTRSRRPSLPFLNESNATLQSRPIRKRDPDQPSLPFDPMPARVEPCLALLKPKVPIGPDW
LYEAKWDGYRLAIHIEPKGVRVITRGGHDWTHRFPTIAAAAKELGVTTGILDGEAVVLDD
HGRSDFGALQRSLGGRGGKRASSESILYAFDLLYLDGHDLTGTELAVRRHLLKDLIPEDN
RTIRFSEEIDLPAEDLLEHACHHHMEGIIAKHRDRPYSSGRTGDWLKIKCVESESFMIVG
YEQSAAARGGIGSLLLAGKRGFDWISVGSVGTGFSASDAAQLKKTLDRLKTNRPVVPLKG
KRYVFVQPTLIAEIEFRGWTDDGSLRHASYKGLREVQDNAAVFDMTGFDR
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgctcgcgccgcccctcattgccattcctcaacgagtccaatgcaacgctgcag
tctcgtccgatccgcaagcgcgatcctgaccagccaagccttccgttcgatccaatgccg
gcgagggtcgagccgtgcctcgcactgctgaagcccaaggtgccgatagggccggattgg
ctctacgaggcgaagtgggatggctaccggcttgcgatccacatcgagccgaagggcgtt
cgtgtcatcacccgcggcggccatgactggacgcatcgttttcccaccatcgccgcggcc
gccaaagaactcggtgtgaccaccggcatactggacggggaagcggtggttttggacgac
cacggccgatcggatttcggcgcgctgcaacgttcgctcggcggtcgaggcggcaagcgg
gcctcaagcgagtccattctctacgccttcgaccttttgtatcttgacgggcatgacctc
accggcaccgagcttgccgtacgccggcaccttcttaaagacctgataccggaagacaat
cggacgatccgcttttccgaagaaatagacctaccggccgaagatctcctcgagcacgcc
tgccaccatcatatggaaggcatcatcgccaaacatcgcgaccggccctacagcagtggc
cgcacgggcgactggctgaaaatcaagtgcgttgagagcgagagcttcatgattgtcggt
tacgaacaatcggcagccgcccgcggcggcatcggcagcctgctgctcgccggcaagagg
ggtttcgattggatttccgtgggctcggtcggaaccggtttcagcgccagcgacgccgcg
cagctgaaaaagacgctcgaccggttgaagaccaaccggccggtcgttcccctgaagggc
aagcgctacgtcttcgtccagccgaccctcatcgccgagatcgaatttcgcggctggacc
gatgacggcagcctgcgtcacgcctcctataaggggctgcgcgaggttcaggacaatgcg
gccgtgttcgatatgaccggctttgaccgttga
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