Rhopalosiphum maidis (corn leaf aphid): 113555486
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Entry
113555486 CDS
T06065
Name
(RefSeq) histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03082
ATP-dependent chromatin remodeling
rmd03083
Polycomb repressive complex
rmd04213
Longevity regulating pathway - multiple species
rmd04330
Notch signaling pathway
rmd04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113555486
03083 Polycomb repressive complex
113555486
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113555486
04350 TGF-beta signaling pathway
113555486
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
113555486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113555486
Enzymes [BR:
rmd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113555486
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113555486
HDAC complexes
Sin3A-HDAC complex
113555486
BRAF-HDAC complex
113555486
REST complex
113555486
SHIP complex
113555486
MiDAC complex
113555486
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113555486
Heterochromatin formation proteins
Other heterochromatin formation proteins
113555486
Chromatin remodeling factors
NuRD complex
113555486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113555486
NCBI-ProteinID:
XP_026815613
LinkDB
All DBs
Position
3:61093365..61106424
Genome browser
AA seq
488 aa
AA seq
DB search
MSITPLKKRVCYHYDSDIGNYYYGQGHPMKPHRISMTHNLILNYGLYQKMEISRFNEITA
EEMTKFHSNEYIQFLRTICPNNKRYYHKKMQRFNVGEDCPVFDGLYTFCQLSAGGSVAAA
VKLNKQSADICINWGGGFHHAKKSKASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGD
GVEEAFYTTDRVMTVSFHKHGKYFPGTGDLGDIGAEEGKYYAVNIPLRDGMDDDSYESIF
VPIITKVMETFQPSAVVLQCGADSLTGDKLGCFNLTVKGHGKCVEFVKRYGLPFLMVGGG
GYTIRNVSRCWTYETAVALGAEIANELPNNDYYEYFGPDFKLHISPSNMINRNASEYLEK
IKNRLFENLRMLPHAPGVQVQAIPEDGVHNESDDEDNVNPDERNPQSITDKKISPDNEFS
DSEDEGMAPGVGGGGRKDNRSYKAVTPARKQACLDSNRIEVNEPKFDILKDDKEDKSDDS
NKNDAVKS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcacaccgctcaagaaacgcgtctgttaccattacgacagtgacataggaaac
tattattatggacaaggtcatcctatgaaaccacataggatttcaatgactcataatttg
attttaaattatggtttatatcaaaaaatggaaatatccagatttaatgaaattactgca
gaagaaatgaccaaatttcatagtaatgagtacatacagttcttaagaactatttgtcct
aataataagagatattatcataaaaaaatgcaaagattcaatgttggtgaagattgtcca
gtttttgatggtttatatacattttgtcagctatctgcgggcggttcagtagcagcagct
gtaaaattaaataaacaatctgcagatatttgtatcaattggggaggtggttttcatcac
gcaaaaaaatctaaagccagtggcttttgttatgttaatgatatagtacttggtatatta
gaattgcttaaataccatcaacgagtgttgtacattgatattgatgtccatcacggtgat
ggtgtcgaagaagcattttatacaactgatagagttatgacagtttcattccacaaacat
ggcaaatattttcctggtactggagatctcggagatattggtgctgaagaaggaaagtac
tatgcagttaacattcccttaagagatggaatggatgatgatagttatgaatcaatattc
gtaccaataattactaaagtaatggagacattccaacctagtgcagttgtattacaatgt
ggagcggattcacttacaggagacaagcttggatgctttaatctaactgttaaaggtcat
ggcaaatgtgttgaatttgtaaaacgttatgggttaccctttcttatggtcggcggaggt
ggttacactattcgaaatgtatctcgatgttggacatatgaaacagctgtggccttagga
gctgaaattgctaatgaattgccgaataatgactattatgaatattttgggcccgatttt
aaacttcatatcagcccttcgaatatgattaatagaaatgcttcagagtatttagaaaaa
attaaaaaccgactctttgaaaacttacgaatgctacctcacgccccaggagttcaagtg
caagctatccccgaagacggagtacacaatgagtcagacgatgaagataatgttaaccca
gatgagaggaatcctcaatctattacagataaaaaaatttcacctgataatgaatttagc
gatagtgaagatgaaggcatggctcctggtgtagggggtggtggccgaaaagataataga
tcttataaagctgtcacacctgctagaaaacaagcatgtttggactcgaataggatagaa
gtcaatgaaccaaaatttgatattctaaaagatgataaagaagacaaatctgatgattct
aataaaaatgatgctgtcaagtcatga
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integrated database retrieval system