Cupriavidus metallidurans: Rmet_3126
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Entry
Rmet_3126 CDS
T00351
Symbol
ddlB
Name
(GenBank) D-alanine:D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme00470
D-Amino acid metabolism
rme00550
Peptidoglycan biosynthesis
rme01100
Metabolic pathways
rme01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Rmet_3126 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rmet_3126 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Rmet_3126 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Rmet_3126 (ddlB)
Enzymes [BR:
rme01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Rmet_3126 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Precursor biosynthesis
Amino acid ligase
Rmet_3126 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATPgrasp_ST
ATP-grasp
RimK
GARS_A
ATP-grasp_4
CPSase_L_D2
TTL
Motif
Other DBs
NCBI-ProteinID:
ABF09998
UniProt:
Q1LIM8
LinkDB
All DBs
Position
complement(3388200..3389183)
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AA seq
327 aa
AA seq
DB search
MSFVAHPNIDPKSLGKVGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPIS
ELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHG
LATPRFAMLYANTDFDAVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDA
DVIAETFIDGAELTCPIVGEGPTAEALPVIKIVAPESNYDYQNKYFTDDTQYLCPSTLPD
ALEREVRALAVEAFRVLGCRGWARADVMLTRDGKPYLLEMNTSPGMTGHSLVPMAARANG
ISYEDFVMQVLAAATLDLHPNEHWKPE
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgtcgcccatcccaatatcgatccgaagtcgctgggcaaggttggcgtgctg
ctgggtggcaagtccgccgagcgcgagatctcgctgctgtccggtaacggtgtgctggcc
gcgctgaagtcgcgcggcgtcgatgcgcatccgttcgatccgggcctgcagccgatcagc
gaactggctgccgcaggtttcgaccgcgtttttatcgcgctgcacggtcgctacggcgaa
gacggcacgatgcagggcctgctcgagcagcttggcatcccctataccggcagcggcgtg
ctggcgtcggcgctggccatggacaagcaggctaccaaacgcctgtggatgacgcacggc
ctggctacgccgcgcttcgcgatgctctacgcgaataccgatttcgatgccgtggttgcc
gatcttggcctgccgctgatcgtcaagccggcccgtgaagggtcgtcgatcggcctgacc
aaggtgatcgccgcggaccagatgcgcgctgcattcgagaaggccgcagggctcgatgcc
gacgtgatcgccgagactttcatcgatggcgcggagctgacttgcccgatcgtgggcgag
ggtccgacggccgaagcgctcccagttatcaagattgtcgcgccggagtcgaactacgac
tatcaaaataagtattttactgacgatacccaatacctgtgcccctcgacattgcccgac
gcgctggagcgcgaagtgcgcgcgctggccgtggaggccttccgggtgctggggtgtcgc
ggctgggcccgcgcggacgtgatgctgacgcgcgacggcaagccttatctgcttgaaatg
aatacgtcccccggcatgaccggccattcgctcgtgccgatggcggcgcgtgcgaatggc
atcagctatgaggacttcgtcatgcaggtactggcggcagccacgctggacctgcatccg
aatgaacactggaaacccgaataa
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