Ralstonia mannitolilytica: TK49_07020
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Entry
TK49_07020 CDS
T03778
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TK49_07020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmn03400
]
TK49_07020 (ligD)
Enzymes [BR:
rmn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TK49_07020 (ligD)
DNA repair and recombination proteins [BR:
rmn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TK49_07020 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJW44483
LinkDB
All DBs
Position
1:complement(1472106..1474727)
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AA seq
873 aa
AA seq
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MPRHLADYRRKRDFTLTQEPSGARRKADEQRRRGDDGALHFVIQKHDARRLHYDFRLELD
GTLKSWAVPKGPSLDPHDKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPH
GDPRKAYREGKLKFELDGEKLHGAWALVRTHLRATGRQPKEQWLLIKEHDDHVRAAADYD
ITRALPGSVISGRHVGEEAPQARAARTPATGAPADTAVRPPAGAVPAALPKTLEPQLATL
VDAPPAHGEWDYEVKFDGYRILARIDGESIRLFSRNGRDWTAKLPRQVRTLPALGLREAW
LDGEVVVMGERGVPDFQSLQNAFETSHAEHIAYYLFDLPFCNGMDLRNVPLRERRALLQR
ILDAAPGDLDREAVLFSGAFNAPPEDLLASACSMSLEGVIGKRADAAYRSGRSPAWIKLK
CGRRQEFVIGGYSAPKGSRSGFGALLLGVYDNAGKLQYAGRVGSGFNETSLRALHHELTS
LATDTPPFVNPPTGSDARDVQWVRPERVAEVAFAEWTREGIVRQAVFQGLRDDKPPRSIV
RETARAPRAGGRKEKPAVSTAQTRPAERKIRAGAERIAGVDVTHPDRVIEKASGTTKADL
ARYYASVADWMLPHLRNRPTSLVRAPDGIEGERFFQKHSAALKLQGITQLDASLDPGHPS
LLAINCAEALVGAVQMGTVELHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLTL
AMLDELGLKGFLKTSGGHGMHVVVPLTRRESAGWEALKGFAQAVVQHMAATFPDRFVAKM
GPRNRVGKIFIDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELQTLQSSAQWTLRTLP
DRLAKLKDDPWADYAGTRQSVTSEMRKRIGLKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgccacgccatctcgccgactaccgccgcaaacgcgatttcaccctcacgcaggagccc
tccggcgcgcgccgcaaggccgacgaacaacgcagacgcggcgacgacggcgcgctgcac
ttcgtcatccagaagcacgacgcgcggcggctgcattacgacttccgcctcgaactcgac
ggcacgctcaagagctgggccgtaccgaagggcccgagcctcgacccgcacgacaagcgc
ctcgcggtgcatgtcgaagaccatccgctcgactacgccgactttgaagggcacatcccc
gaaggccagtacggcggcggcgacgtgatcgtgtgggaccgcggcacgtggcgcccgcac
ggcgatccgcgcaaggcctatcgcgagggcaagctcaagttcgaactggacggtgaaaag
ctgcacggcgcgtgggcgctggtgcgcacgcatctgcgcgccaccggccggcagccgaag
gagcagtggctgctgatcaaggaacatgacgaccacgtgcgcgccgcggccgactacgac
atcacgcgcgcgttgcccggcagcgtcatcagcggcaggcatgtcggcgaagaggcgccg
caggcgcgtgccgccaggacgcccgccaccggagcccctgccgataccgcggtgcggccg
cccgccggcgccgtgccggccgcgctgccgaagacgctggagccgcagctggccacgctg
gtcgatgcgccgcccgcgcacggcgaatgggactacgaggtcaagttcgacggctaccgc
atcctcgcgcgcatcgacggcgagagcatccgcctgttcagccgcaacggacgcgactgg
acggccaagctgccgcgccaggtgcgcacactgcctgcgctgggcctgcgcgaggcatgg
ctcgatggcgaggtcgtggtgatgggcgagcgcggcgtgcccgacttccagtcgctgcag
aacgcgttcgaaacgtcgcacgccgagcacatcgcgtattacctcttcgacctgccgttc
tgcaacggcatggacctgcgcaacgtgcccctgcgcgagcggcgcgcgctgctgcagcgc
atcctggacgcggcgccgggtgacctggaccgcgaggccgtgctgttctccggcgccttc
aacgcgccgccggaagacctgctcgcctcggcatgcagcatgtcgcttgaaggcgtgatc
ggcaagcgcgccgatgcggcgtatcgctcgggccgcagccctgcatggatcaagctcaag
tgcgggcggcggcaggagttcgtgatcggcggctacagcgcacccaagggcagccgcagc
ggcttcggcgcactgctgctcggcgtgtacgacaacgcgggcaagctccagtacgcgggc
cgcgtgggcagcggcttcaacgagacgagcctgcgcgcgctccatcacgaactcaccagc
ctggcgaccgacacgcccccgtttgtgaacccacccaccggctccgacgcgcgcgacgtg
caatgggtcaggcccgagcgcgtggccgaggtcgcctttgccgaatggacgcgcgagggc
atcgtgcggcaggccgtcttccagggcctgcgtgacgacaagccgcctcgcagcatcgtt
cgcgaaaccgccagagcgccccgtgcaggcggccgcaaggagaagcccgccgtgagcacc
gcccagacgcgccccgccgaacgcaagatccgcgcgggcgcggagcgcatcgcgggcgtc
gacgtgacgcacccggaccgcgtcatcgaaaaggccagcggcaccaccaaggccgatctg
gcgcgctactacgcgagcgtcgccgactggatgctgccgcacctgcgcaaccggcccacg
tcgctcgtccgcgcgcccgacggcatcgaaggcgaacgcttcttccagaagcattcggcg
gcgctcaagctgcagggcatcacgcagctcgatgcgtcgctggacccggggcacccctcg
ctgctggcgatcaactgcgcggaggcgctggtcggcgcggtgcagatgggcacggtggag
ctgcacacctggaacgcactcgccgatcgcatcgaacagccggaccgcatcgtcttcgac
atcgacccggaccccgccctgccgtttgcacgcgtcatcgaggccacgcagctgacgctg
gcgatgctcgacgaactcgggctgaagggcttcctgaagaccagcggcggccatggcatg
cacgtggtggtgccgctcacgcgccgggagtcggccggctgggaagcgctgaaaggcttt
gcgcaggccgtggtccagcacatggccgcgacctttccggaccgcttcgtcgccaagatg
gggccgcggaaccgcgtggggaagatcttcatcgattacctgcgcaacaaccgtggggcg
agcacggtcgcggcgtattccgtgcgcgcacgcacggggctgccggtgtcggtgccgatc
cggcatgacgaactgcagacgctgcagtcttctgcgcagtggacgctgcgtacgctgccc
gaccgcctggccaagctcaaggacgacccttgggccgattacgccggcacgcgccagtcc
gtcacgtcggagatgcgcaagcgcatcggcctcaaggcctga
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