Ralstonia mannitolilytica: TK49_10255
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Entry
TK49_10255 CDS
T03778
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK49_10255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmn03019
]
TK49_10255
03016 Transfer RNA biogenesis [BR:
rmn03016
]
TK49_10255
Enzymes [BR:
rmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TK49_10255
Messenger RNA biogenesis [BR:
rmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TK49_10255
Transfer RNA biogenesis [BR:
rmn03016
]
Prokaryotic type
tRNA degradation factors
TK49_10255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Dimerisation
HTH_11
HTH_12
Motif
Other DBs
NCBI-ProteinID:
AJW45054
UniProt:
A0A2N5L9T6
LinkDB
All DBs
Position
1:2150438..2153026
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AA seq
862 aa
AA seq
DB search
MNQPTYPIPSREEILGVLRTSGSPLSATDIAKALSVTRKEHDGFIKRLTAMERDGQIELN
RKGHYELAHQPNFIEGRVIGHRDGYGFFVRDDGEPDIFLPEREMQKAMHGDRALVRAVGY
DRRGRSEGQIVEILQRANKRIIGRLLSENGTLVVAPEDKRLGRDILIAPKGQGKAKVGQV
VSVEILEYPDRYVQPIGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSEPAQREAEALPDV
VRESDLAGRIDLRDVPLVTIDGEDARDFDDAVYAEPIKIGRGKGWRLIVAIADVSHYVRP
GHPLDADAIDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGQIKAF
QFYPAVMHSKARLTYNEVWSILSNVKGPEAAKRAPLVPHLQDLYELYQTLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAAEMLEKYKHSALYRVHA
GPTEEKLQALRAFLKTSGLTLGGGDKPEAADYAELMEKIAARPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYPAYAHFTSPIRRYPDLLVHRAIKAILHHTRYVPSLAPGVQLNSALSP
KARRLQAEAEKGMPAAVVNKAKAEAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDK
LGNEFSGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYRL
TDRVRVQLLRVDLDARKMDFRLIQEPSTKALRPAKVTGAAEGVATRQPAVATPAPPVGRK
KPRQLAALLGGTAKPEESFDETLDRVFEEQPVFEPGARALPPGHAHAKPARKKQAARPAK
SKGKTAAPRKAAAKSARKTRGR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaaccgacttatccgatcccgagccgcgaggaaatcctcggtgtgctgcgcacg
tcgggatctccgctgtctgccaccgatattgccaaagcgctgtcggtcacgcgcaaggag
cacgacggcttcatcaagcgtctgaccgccatggagcgggatggtcagatcgaactcaac
cgcaagggacactacgaactggcgcaccagcccaacttcatcgaaggccgcgtgatcggc
caccgcgacggctacggcttcttcgttcgcgacgatggcgagcccgacatcttcctgccc
gagcgcgagatgcagaaggccatgcacggtgaccgcgccctcgtgcgggccgttggctac
gaccgccgtggccgttccgaaggccagatcgtcgagatcctgcagcgggcgaacaagcgc
atcatcggccgcctgctttccgagaacggcacgctggtggtggcgcctgaagacaaacgc
ctgggccgcgacatcctgatcgctcccaaggggcagggcaaggccaaggtgggccaggtc
gtgagcgttgagatcctggaatatccggatcgctacgtgcagccgatcggccgcgtggtc
gaggtgctcggcgagatcgacgacccgggcatggagatcgaaatcgccgtgcgcaagtac
ggcgtgccgcacgaattctccgagccggcgcaacgcgaggcagaggcactgcccgacgtg
gtgcgcgaatccgatctggccggccgcatcgacctgcgcgacgttccgctggtgaccatc
gacggtgaagacgcgcgcgactttgacgatgccgtctatgcagagcccatcaagatcggc
cgcggcaagggctggcgcctgatcgtggcgattgcggacgtgtcgcattacgtccggccg
gggcatccgctggacgccgatgcgattgaccgcgcgacttcggtctacttcccgcgccgc
gtgatcccgatgctgcccgagaagctctccaacggcctgtgctcgctgaacccggaggtc
gaccgcctgtgcatggtgtgcgatgcggtcatcacggccaaggggcagatcaaggcattc
cagttctatccggcggtgatgcattcgaaggcgcgcctgacctacaacgaggtctggtcg
atcctgtcgaacgtgaagggccccgaggctgccaagagggcgccgctggttccgcatctg
caagacctgtacgagctgtatcagacgctgctcaaggcgcgacgggagcgtggcgcgatc
gacttcgacacgaccgagacgtacatcgtctgcaacgcgcagggcaagatcgagcagatc
ctgccgcgcacgcgcaacgacgcgcaccggctgatcgaagagtgcatgctgacggccaac
gtctgcgccgctgaaatgctcgagaagtacaagcactctgcgctgtaccgcgtgcatgcg
ggtccgacggaagaaaagctgcaggcgctgcgtgccttcctgaagacgagcggtctgacg
ctcggcggcggcgataagcccgaggcggccgactatgcggagctgatggagaagatcgcc
gcgcgccccgacgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggccgtc
tacagcccggacaatatcggccactttggcctggcatacccggcctacgcgcacttcacc
agtccgatccggcgctaccccgatttgctcgtgcaccgtgccatcaaggcgatcctgcat
cacacgcgctatgtgccgtcgctggcgcccggcgtgcagctgaacagtgcgctctcgccc
aaggcgcgccgcctgcaggccgaggccgagaagggcatgccggccgccgtcgtgaacaag
gccaaagcggaggcgatctggcacgagctcggcgtccactgctcggccaacgagcgccgc
gccgacgaggcttcgcgcgatgtggaagcatggctcaagtgctacttcatgcgcgacaag
ctcggcaacgagttctcgggcaccgtcagcgccgtcacgtcgtttggtatcttcgtgcag
ctcgacgagctgtatgtggaaggcctggtccacgtgacggaactcggcagcgactacttc
cagtacgacgaggcacgcaacgaactgcgcggcgagcggaccggcatccgctatcggctc
acagaccgcgtgcgcgtgcaactcctgcgtgtggacctcgatgcccgcaagatggatttc
cgtctgattcaggaaccttcgaccaaggcgctgcgcccggccaaggtgacgggagcggcc
gaaggcgtcgcgacgcgtcagcctgccgtggccacgccggcgccgccggttggccgcaag
aagccgcgccagctcgcggcgctgctgggcgggacggccaagcccgaggagtcgtttgac
gagacgctcgaccgcgtgttcgaagagcagccggtattcgagccgggcgcacgcgcgttg
ccgccgggccatgcgcatgccaagcccgcgcgcaagaagcaggcagcacgccccgccaag
tccaagggcaagaccgccgcgccgcgcaaggccgcggccaagtctgcgcgcaagacgagg
gggcgctaa
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