Roseomonas mucosa: FOB66_10680
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Entry
FOB66_10680 CDS
T06208
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmuc
Roseomonas mucosa
Pathway
rmuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOB66_10680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmuc03400
]
FOB66_10680 (mfd)
Enzymes [BR:
rmuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOB66_10680 (mfd)
DNA repair and recombination proteins [BR:
rmuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOB66_10680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SNF2-rel_dom
SecA_DEAD
AAA_25
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QET93229
LinkDB
All DBs
Position
4:1597810..1601277
Genome browser
AA seq
1155 aa
AA seq
DB search
MSATVERPVVGATVHGAPEGFDALLLARQRAESGRPILHACRDDARMMRMVEALGFFAPD
VEVLRFPAWDCLPYDRVSPNPEILAERVATLARLLEPGDKPRILLTTVNALVQKVPPRAV
FEGATLQLKKGGRVEPERLTAFLEANGYGRTGTVMEPGEYAVRGGIVDLYPAGEPGPVRL
DLFGDEIEGLRRFDPESQRSAEALTELWVRPVGEVFLDPDSIAHFRTAYLDLFGMAATED
PLYVSVSAGRRHPGMEHWAGLFHESMETLPDYLPPGAQVSLDHQAEDVLDARLEMIQDHY
EARRLPPREGEQPYRPAPPRKLYLDRAGWNRMLSKGTLAHFSPFTAEDGPDAGGRPGKLF
SDVRTSGGNVFAAYKEHAEAMAAQGRRAVLAAWTRGSRERLANLLRENGVVAETTGNWPS
AQRLPKGVVALAILGVERGFTAGGIALTGEQDLLGERIARPPRRRKRADQFIADATEIAE
GDLVVHADHGIGRYDGLVTIEVNGAPHDCLRLVYDGNDRLFLPVENIEVLTRFGSETAGV
ALDKLGGASWQNRKAKAKQRIRDMAAELIRTAAERQVQEGRAAVPPEGAWDEFCARFPFA
ETEDQQRAIGDVVEDLASGRPMDRLICGDVGFGKTEVALRAAFLVAMTGAQVAVVVPTTL
LARQHFRTFARRFEGLPVKVAQLSRLVTTKEAAQARAGLKDGTVNIVIGTHALLAKGVEF
DDLGLVIVDEEQHFGVAHKERLKALKTDVHMLTLTATPIPRTLQLALSGVREMSVIATPP
VDRLAVRTFIAPFDSVVIREAIQRERFRGGQIFCVCPRLEDLPKMAERLREIVPEARLIE
AHGRLSATELERVMTEFGDGKYDILLATNIVESGLDMPAVNTLVIHRADMFGLAQLYQLR
GRVGRGKHRGYAYLTWPPAHRLSAASQKRLEVMQTLDNLGAGFTLASHDLDIRGAGNLLG
QEQSGQIREVGIELYQQMLEDAVQDVRNRAKGKRRRDGEEDTDWTPNINLGLPVLIPDAY
VRDLPVRLGLYRRIGTLASEAEMEAMAAELVDRFGPLPPEVENLLQVVSIKRLCREAGVE
KLDAGPKGVVLAFRRNRFANPGGLVNWVASQKGAVKLRPDHKLALVREMDLPARVKAARS
ILGALVRVLEEVKPG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgccacggtggagcgtccggtcgtcggcgccaccgtccatggggcgccggagggg
ttcgacgcgctgctgctggcccgtcagcgggcggagagcggccggcccatcctccatgcc
tgtcgcgacgacgcgcggatgatgcggatggtcgaggcgctgggcttcttcgccccggat
gtcgaggtgctgcgcttcccggcctgggactgcctgccctatgaccgcgtctcgcccaat
ccggagatcctggccgagcgcgtggcgaccctggcacggctgctggagcccggggacaag
ccgcgcatcctgctcaccaccgtcaacgccctggtgcagaaggtcccgccgcgcgcggtc
ttcgagggtgccacgctgcagttgaagaagggcggacgggtcgagccggagcggctgacc
gctttcctggaagccaatggctatggccgcaccggcacggtcatggagccgggcgaatac
gccgtgcgcggcggcatcgtcgacctctatccggcgggcgagccggggccggtgcggctc
gacctcttcggcgacgagatcgaggggctgcggcgcttcgatccggaaagccagcgttcc
gccgaggcactgaccgagctctgggtccgcccggtgggcgaggtcttcctcgacccggat
tccatcgcgcatttccggacggcgtatctcgacctcttcggcatggccgcgaccgaggac
ccgctctacgtctcggtctcggcgggccgccgccacccgggcatggagcactgggcgggc
ctgttccacgagagcatggagaccctgccggactatctgccgcccggcgcccaggtcagc
ctggaccaccaggccgaggacgttctcgacgcccggctggagatgatccaggaccattac
gaggcccgccgcctgccgccgcgcgagggcgagcagccctatcgcccggcgccgccgcgc
aagctctacctggaccgcgccggctggaaccgcatgctctcgaagggcacgctggcgcat
ttctcgcccttcaccgccgaggacggccccgatgccggcggccggccgggcaagctgttc
agcgacgtgcggacctccggcggcaatgtcttcgccgcctacaaggaacacgccgaggcc
atggcggcgcagggtcgccgcgccgtgctcgccgcctggacccggggctcgcgagagcgg
ctggcgaacctgctgcgcgagaatggtgtggtcgccgagacgaccggcaactggccgtcg
gcgcagcgcctgcccaagggggtggtggcgctggccatcctgggggtggagcgcggcttc
accgccggcggcatcgcgctgaccggcgagcaggacctgctgggcgagcgcattgcccgc
ccgccgcgccgccgcaagcgggccgaccagttcatcgccgacgccaccgagatcgccgag
ggcgatctggtggtccatgccgaccatggcatcggccgctatgacgggctggtgaccatc
gaggtcaacggtgcgccgcatgactgcctgcggctggtctatgacggcaatgaccggctc
ttcctgccggtcgagaacatcgaggtcctgacccgcttcggctccgagaccgccggggtg
gcgctggacaagctgggcggcgcctcctggcagaaccgcaaggccaaggcgaagcagcgc
atccgcgacatggccgcggaactgatccgcaccgccgccgagcgtcaggtgcaggagggc
agggccgccgtcccacccgagggggcctgggacgaattctgcgcccgcttccccttcgcc
gagacggaggaccagcagcgcgccatcggcgacgtggtcgaggacctcgcctccggccgg
ccgatggaccggctgatctgcggcgatgtcggcttcggcaagaccgaggtggcgctgcgc
gcggccttcctggtggcgatgaccggcgcgcaggtcgcggtggtggtgccgacgaccctg
ctggcgcggcagcatttccgcaccttcgcccggcgcttcgaggggttgccggtgaaggtg
gcccagctctcgcgcctggtcacgacgaaggaggcggcgcaggcccgggcggggctgaag
gacggcacggtcaacatcgtgatcggcacccacgccctgctcgccaagggggtcgagttc
gacgatctgggcctcgtcatcgtggacgaggagcagcatttcggcgtcgcccacaaggag
cggctgaaggcgctcaagaccgacgtccacatgctgacgctgaccgccacgccgatcccg
cgcacgctgcagctggcgttgtccggcgtgcgggagatgagcgtgatcgccacgccgccg
gtggaccggctggcggtgcggaccttcatcgcccccttcgacagcgtggtgatccgcgag
gcgatccagcgcgagcgcttccgcggcgggcagatcttctgtgtctgcccacgcctggag
gacctgccgaagatggccgagcggctgcgcgagatcgtgcctgaggcacggctgatcgag
gcgcatggccggctttccgccaccgagctggagcgggtgatgaccgagttcggcgacggc
aagtacgacatcctgctcgccaccaacatcgtggaaagcgggctggacatgccggcggtg
aacacgctggtgatccaccgcgccgacatgttcgggctggcgcagctctaccagctgcgg
gggcgggtcgggcgcggcaagcaccggggctatgcctatctcacctggcccccggcgcac
cggctctccgccgcctcgcagaagcgactggaggtgatgcagaccctggacaacctgggc
gccggcttcaccctggccagccacgacctggatatccgcggcgccggcaacctgctgggc
caggagcagtcgggccagatccgcgaggtcggcatcgagctctaccagcagatgctggag
gatgcggtgcaggacgtccgcaaccgcgccaagggcaagcggcggcgggacggggaggag
gacaccgactggacgccgaacatcaatctcggcctgccggttctgatccccgacgcctat
gtgcgcgacctgcccgtccggctcggcctctatcgccggatcggcaccctggcctccgag
gccgagatggaggcgatggcggcggagctggtggaccgcttcgggccgctgccgccggag
gtggagaacctgctccaggtcgtctccatcaagcgcctctgccgtgaggccggggtggag
aagctggatgccgggcccaagggcgtggtgctcgccttccgcaggaaccgcttcgccaat
ccgggcgggctggtgaactgggtggcctcgcagaaaggcgccgtgaagctgcggcccgac
cacaagctggccctggtgcgggagatggacctgccggcccgggtgaaggccgccaggagc
atcctgggcgcgctggtccgcgtgctggaggaggtcaagcccggctga
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