Rattus norvegicus (rat): 290907
Help
Entry
290907 CDS
T01003
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
290907 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rno03400
]
290907 (Lig4)
Enzymes [BR:
rno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
290907 (Lig4)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
290907 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
290907
NCBI-ProteinID:
NP_001099565
RGD:
1304639
Ensembl:
ENSRNOG00000014605
UniProt:
A6IWS2
D4A0U6
LinkDB
All DBs
Position
16:86220345..86228930
Genome browser
AA seq
911 aa
AA seq
DB search
MASSQASRTVAAHVPFADLCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNKKDV
PDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGARS
DAGDFATIAYFVLKPRCLQKGSLTIQKVNELLDLVASNNSGKRKDLVKKSLLQLITQCSA
LEQKWLIRMIIKDLKLGVSQHTILSIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFRPMLAAVADVERVEKDMKQQSFYIETKLDGERMQMHKDGALYRYFSRNGYNYTD
QFGESPQEGSLTPFIHNAFKTDVQVCILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYDILSSTFTPIQGRIEIVQKTQAQTKQEVVDALND
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAETPPPGDKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFQRKSPPSCILC
GTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKTGSTLRFPRIEKIRDDKEWHDCMTLDDLE
QLRGKASGKLATKHLHIGDDDEPREKRRKPISKTKKTIGIIEHLKAPNLSNINKVSNVFE
DVEFCVMSGLDGYPKPDLENKIAEFGGYIVQNPGPDTYCVIAGSENIRVRNIISSDRHDV
VKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDADLDQLKEVFLR
IKPSEQQTPEEMAPVIADLECRYSWDHSPLSMFRHYTVYLDLYAVINDLSSKIEATRLGV
TALELRFRGAKVVSRLSEGVSHVIIGEDQRRVSDFKTFRRTLKKKFKILQERWVIDSVDK
CELQEENLYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacaagcctcacgaactgtcgcagctcatgtcccctttgcagacttgtgc
tccaccttagaacgaatacagaaaggtaaagaccgtgcagaaaaaatcaggcacttcaag
gagtttctggattcttggagaaaatttcatgatgcccttcataagaacaagaaggatgtt
ccggactctttttacccagcaatgagacttattctccctcagctagagagagagaggatg
gcttacggaatcaaagaaaccatgctggctaagctttacatcgaattgctcaatttacca
agagaaggcaaggatgcccagaagctcctgaattaccgaacccccagtggagctcgctca
gatgctggggactttgccacgattgcatactttgttttgaagccaaggtgcttacagaaa
ggaagcttaaccatacagaaggtgaatgaactcttagacttagttgccagcaataactct
ggcaaaagaaaagatctagtgaaaaagagccttcttcagttaataacccagtgttcagca
ctcgagcaaaagtggctgattcgcatgattattaaggacttaaagcttggtgtcagtcag
cacacgatattgtccatcttccacaatgatgcagtcgagttgcacaatgtcaccacagat
ctggaaaaggtctgtaggcagctacatgacccctccgtagggctcagcgacatctccatc
actttgttctctgcctttaggccaatgctagctgctgtagcagatgtggagcgtgtggag
aaggacatgaagcagcagagtttctacatcgaaactaagctcgatggcgagcgcatgcag
atgcacaaggatggcgccctgtaccggtacttctccagaaatggttacaactacaccgat
cagttcggcgaatctccacaggaaggctctctcaccccgtttattcacaacgcattcaag
acagatgtgcaagtgtgcatccttgatggcgagatgatggcctacaacccaacgacacag
actttcatgcagaagggggtcaagtttgatatcaaaaggatggtcgaagattctgaccta
cagacatgctactgtgttttcgatgtgctgatggttaataataagaagctagggcgtgag
actctcaggaagaggtatgatatccttagtagcactttcacacccatacaaggtcgaata
gagatagtgcagaaaactcaagctcagacaaagcaggaagtagtggatgcattaaatgat
gccatagacaagagagaagaggggatcatggttaaacaccctctgtccatttacaagcca
gacaaaagaggtgaagggtggctaaagattaaaccagagtatgtcactggattgatggat
gaattagacctcttaattgttgggggctactggggtaaaggttctcgaggtggcatgatg
tctcactttctgtgtgcagtggcagagacaccacctcctggtgacaagccatctgtgttc
cacactctgtgccgtgttgggtcgggttacacgatgaaagaactctatgacctgggcttg
aaattggcaaaatactggaagcctttccaaagaaaatctccaccaagctgtattttgtgt
ggcacagagaagccagaagtgtacattgaaccccagaactctgtcatcgttcagatcaag
gcggcagagatcgtccccagtgacatgtacaagactggctctaccttgcgcttcccacgc
atcgagaagatcagagatgacaaagagtggcatgactgtatgacgctggatgacctggag
cagctgagggggaaagcatctgggaagcttgccacaaaacaccttcacataggtgacgat
gacgaacccagagaaaaaaggcggaaacccatctctaagacgaagaaaaccattggaatc
attgaacacctaaaagcgcctaacctttctaacataaacaaagtttctaatgtatttgaa
gatgttgagttttgtgtcatgagtggattagatggttatccaaagcctgacctagagaac
aaaattgcagaatttggtggttatatagtccagaatccaggcccagatacatactgtgtg
attgcaggttctgagaacattagggtcagaaacatcatctcttcagataggcatgatgtt
gtcaagcccgagtggcttttagagtgttttaaaacaaaaacatgtgtgccatggcaaccc
cgctttatgattcacatgtgcccatcaacaaagcagcattttgcccgtgaatatgactgc
tatggtgatagctatttcgttgatgcagatttggatcaattgaaagaagtgtttttaaga
attaaacccagtgagcagcagactcctgaagaaatggcccctgtgattgctgacctagaa
tgtcgttattcctgggatcactctcctctcagtatgtttcgacactacaccgtttatttg
gacttgtatgctgttattaatgacttaagttccaaaatcgaagccacaaggttaggtgtt
acagcacttgagctgcggtttcgtggagcaaaggtggtttcccgcttatctgaaggggtg
tctcacgtaatcatcggggaagatcagagacgagtcagtgactttaaaacgttcagaaga
acgcttaagaaaaagtttaaaatcctgcaggaacgttgggtgatcgattcagtagacaag
tgtgaactgcaggaagaaaacctgtatttgctttag
DBGET
integrated database retrieval system