Rattus norvegicus (rat): 308906
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Entry
308906 CDS
T01003
Symbol
Trim5
Name
(RefSeq) tripartite motif-containing protein 5
KO
K10648
tripartite motif-containing protein 5 [EC:
2.3.2.27
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03250
Viral life cycle - HIV-1
rno05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
308906 (Trim5)
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
308906 (Trim5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rno04121
]
308906 (Trim5)
Enzymes [BR:
rno01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
308906 (Trim5)
Ubiquitin system [BR:
rno04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
308906 (Trim5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_6
zf-RING_5
zf-C3HC4_3
AAA_11
zf-Nse
zf-ANAPC11
TRAF3_RING
U-box
ASFV_p27
Bacillus_HBL
LprI
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
308906
NCBI-ProteinID:
NP_001014045
RGD:
1304579
Ensembl:
ENSRNOG00000017191
UniProt:
F7FKX1
Q6AYT1
LinkDB
All DBs
Position
1:complement(168132277..168149263)
Genome browser
AA seq
511 aa
AA seq
DB search
MASEFVMNLKEEVTCPICLDLMVEPVSGDCGHSFCQACITLNYESSKCNQDEFICPVCRV
SYLFKNLRPNRHVANIVQRLKEFKSSPEEEPKVLSCARHGEKLQLFCKKDMMPICWLCER
SQEHRGHQTVLIEEVVQEYKEKLQAALQKLMADKKEFENWKDDLQKERTYWQNQIQKDVE
NVQSEFKGMRDIMDSEEKKELQKLMQEKEDIMSSLEESENEYSQQSKLLGDLILDVEHQL
QCSATEMLQGVENTIKRSHTFSMRKPKTIPKEQRRVFRAPDLQGMLQVLQEVTEAQRYWV
QVTLVESNNPNIFITADKRQIRYEDHQARHFARPTENCHAGVLGYPAIQSGKHYWEVDVS
GKGSWVLGLSDGSYLFNPIFRSNAERPPNPPLFRLNLSNDSHSRLSLSNDSHYQPKYGFW
VIGLWGNSVYNAFEECTFTGKPSVLTLSLMVRPCRVGIFLDCAAGTLSFYNISNHGTLIY
RFCAGSFPDRVFPYFNPMGSSEPLTICWPDS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagaattcgtgatgaatttaaaagaggaggtgacctgtcctatctgcctggac
ctgatggtagaacctgtgagtggagattgtggtcacagcttctgccaagcctgcatcacg
ctgaactatgaatccagcaaatgcaatcaggatgagttcatttgccctgtgtgccgagtt
agttacctgtttaagaacctgaggcccaatcgacatgtggccaacatagtgcagaggctc
aaagagttcaagtccagcccagaagaggagccgaaggtgctttcttgtgcaaggcatgga
gagaaactccagctcttctgtaagaaggacatgatgcccatctgctggctttgtgagcga
tctcaggagcaccgtggacaccaaacagttctcattgaagaggtggtccaggagtataag
gagaagctgcaggcagctctgcaaaagctgatggcagacaagaaagaatttgagaactgg
aaagatgaccttcaaaaggagagaacttactggcagaatcaaatacagaaagatgtggaa
aatgtccagtcagagtttaaaggaatgagagatatcatggactctgaggagaagaaggaa
ttgcagaagctgatgcaagagaaggaagacattatgagcagcctggaagagtctgaaaat
gagtattctcagcagagtaagttgctaggagacctcatcttagatgtggaacatcagtta
caatgctcagccacggaaatgctgcagggtgtagagaacaccataaaacggagtcatact
ttttcgatgaggaagcccaaaaccatccccaaggaacaaagaagagtgttccgagcccct
gatctgcaaggcatgctgcaagtgttacaagaggtcacagaggcccaacgctactgggtt
caagtgacgctggttgaaagcaacaatccaaacattttcattaccgccgacaaaagacag
atacgatatgaagaccaccaagcaagacattttgcccgtccgactgaaaactgtcatgca
ggtgtcctgggatacccagctatccaatcaggaaaacactactgggaagtagatgtgtct
ggaaaaggttcttgggttctgggattaagtgatggaagctacctctttaatccaatattt
cgttcaaatgcagaaagacccccaaacccccccttatttcgtttgaatcttagtaatgat
tcacattctcgtttgagtcttagtaatgattcacattatcaacctaaatatggcttctgg
gttatagggctgtggggaaattctgtgtataatgcttttgaggagtgtacgttcacaggc
aagcccagtgtgttgaccctctctctgatggtccgaccctgtcgtgtcggtattttcctc
gactgtgcagctggcaccctctcgttttacaatatttccaaccatggcactcttatctac
agattctgtgcaggttcctttcctgatagggtttttccatattttaaccccatgggaagt
tcagagccattgacaatatgctggccagactcttaa
DBGET
integrated database retrieval system
