Rattus norvegicus (rat): 81513
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Entry
81513 CDS
T01003
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03030
DNA replication
rno03410
Base excision repair
rno03420
Nucleotide excision repair
rno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
81513 (Lig1)
03410 Base excision repair
81513 (Lig1)
03420 Nucleotide excision repair
81513 (Lig1)
03430 Mismatch repair
81513 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rno03032
]
81513 (Lig1)
03400 DNA repair and recombination proteins [BR:
rno03400
]
81513 (Lig1)
Enzymes [BR:
rno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
81513 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
81513 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
81513 (Lig1)
DNA replication proteins [BR:
rno03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
81513 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
81513 (Lig1)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
81513 (Lig1)
NER (nucleotide excision repair)
Other NER factors
81513 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
81513 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
81513
NCBI-ProteinID:
NP_001019439
RGD:
621424
Ensembl:
ENSRNOG00000014193
UniProt:
Q566D8
LinkDB
All DBs
Position
1:83243043..83281707
Genome browser
AA seq
913 aa
AA seq
DB search
MQRSIMSFFQPTTTEGKAKKPEKEIPSSIREKEPPPKVALKERNRAVPESDSPVKRPGRK
VAQVLSSEGEDEDEAPGTPQVQKPVSDSKQSSPPSPDSCPENSSPSMDISPSGFPKRRTA
RKQLPKRTIQDTLEEHNEDKDKAAKKRKKEDTQTPTESLTEAEEVKQKEEQVEDQPTVPP
EPTESPESVTLTKTENIPMCKAGVKQKPQEEEQSKPPARGAKPLSSFFTPRKPAVKTEVK
QEESDTPRKEETKGAPDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSAR
LKMVETLSNLLRSVVALSPTDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQ
LESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVFTKFCDIARLTGSASMAKKMD
IIKGLFVACRYSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGK
GKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLA
HPTRGVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRI
PKIKHPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYL
NGESLARQPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVK
TLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDE
ESEELQAICKLGTGFSDEELEEHHQSMQALLLPTPRPYVRIDGAVAPDHWLDPSVVWEVK
CADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPEQATTSDQVASLYRKQSQIQN
QQSSDLDSDVEDY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaagtattatgtcatttttccaacccacaacaacagaaggtaaagcgaagaag
ccagagaaggagatacccagcagcatcagagagaaggaaccccctccaaaggtggcattg
aaggagaggaatcgagcagtgcctgagagtgattctccagtgaagaggccaggaaggaag
gtggcccaggttctgagcagtgaaggggaggacgaagatgaagcccctggcaccccccaa
gtccaaaagcctgtgtcagactccaaacagagctctcctcccagccctgactcctgtcct
gagaacagcagcccctccatggacatctccccatcaggattcccaaagcgccgaactgca
cggaagcagctcccaaaacggacaattcaagacactcttgaggagcacaatgaagacaaa
gacaaagcagctaagaaaaggaaaaaagaagatacacagaccccaacagaaagcctcaca
gaggctgaagaagtaaaacagaaggaagaacaggtggaggaccagcccacagtaccccct
gagcccacagagtcccctgagtcagtaaccctcacaaagacagagaacattccaatgtgt
aaggcaggtgtgaaacagaagcctcaggaagaagaacagagcaagcctcctgccaggggt
gccaagccactgagcagtttcttcacaccccgaaaaccagcagtgaaaactgaagtcaaa
caagaagagtcagacactccaaggaaggaagagaccaagggagccccggatccaaccaat
tataatccttccaagagtaactaccatcccattgaagatgcctgctggaaacatggccaa
aaggttccttttcttgctgtggcccggacatttgagaagattgaggaggtgtctgctcgg
cttaagatggtggagacactgagcaacctgctgcgctccgtggtggccctgtccccaaca
gacctgctccctgttctctatctcagcctcaaccgccttgggccgcctcagcagggtcta
gaactgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccacaggtcgtcag
ctggagtccatccgggctgaggtagctgagaagggggatgtggggctagtggcggagaac
agccgaagcactcagaggctcatgctgcctccacctccacttactgtttctggagtcttt
accaaattctgtgacattgcccggctcactggcagtgcttccatggccaagaaaatggac
attatcaagggcctttttgttgcctgccgctactcagaagcccggtttattgccaggtcc
ctaagtgggcggctgcgccttgggctggctgagcagtcagtactggctgctcttgcccag
gctgtgagcctcacaccccctggccaagaatttcccacagccgtggtggatgctgggaag
ggcaagacagcagaggccagaaagatgtggttggaagaacaaggcatgatcttgaagcaa
accttctgtgaggtgcctgatctggatcgcatcatccctgtgctgctggaacatggcttg
gaaagtctcccagagcactgcaagctgagcccaggggttcctcttaaaccaatgctggcc
catcccactcggggtgtccgtgaggtcctgaaacgctttgaggaggtcgacttcacctgc
gagtataaatacgatgggcagcgggcacagatacatgttctggaaggtggagaagtgaag
atcttcagcaggaaccaggaagacaactcaggaaagtatcctgacatcatcagccgcatc
cccaagattaaacacccctcagtcacatctttcattctggacactgaggctgtggcctgg
gaccgggaaaagaagcagatccagccattccaagtgctcaccacacgcaagcgcaaggag
gttgatgcatcggagatacaggtacaagtgtgtctgtatgcttttgacctcatctacctc
aacggagagtccctggctcgccagcccctgtctcgacgccggcagctactccgtgagaac
tttgtggagacagagggtgagtttgtctttgccacctccttggacaccaaggacatcgag
cagattgccgagttcttagagcagtcagtgaaggactcctgtgagggcctgatggtgaag
accctggatgttgatgctacctatgagatcgccaagaggtcacacaactggctcaagctg
aagaaggactaccttgaaggtgtgggcgacactctagaccttgtggtgattggtgcctac
ctgggccgggggaagcgggctggccggtatgggggcttcctgttggctgcctacgatgag
gagagtgaagagctgcaggccatatgcaagctgggaaccggattcagcgacgaggagctg
gaagaacatcatcagagcatgcaggcccttttattgcctaccccacgcccctatgtgagg
attgatggggcagtggccccagaccactggctagacccgagtgttgtgtgggaggtgaaa
tgtgctgatctctccctgtctcccatctaccctgctgctcggggcctggtggacaaagaa
aaagggatctcccttcgtttccctcggttcattcgtgtccgtgaggataagcagccagag
caggccactaccagtgaccaggtggcctctttgtaccggaagcagagtcagattcagaac
cagcaaagctcagacttggactctgatgttgaagattactaa
DBGET
integrated database retrieval system