Rhodococcus opacus PD630: Pd630_LPD00852
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Entry
Pd630_LPD00852 CDS
T03071
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase dacB
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa00550
Peptidoglycan biosynthesis
roa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Pd630_LPD00852
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
roa01002
]
Pd630_LPD00852
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
roa01011
]
Pd630_LPD00852
Enzymes [BR:
roa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Pd630_LPD00852
Peptidases and inhibitors [BR:
roa01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
Pd630_LPD00852
Peptidoglycan biosynthesis and degradation proteins [BR:
roa01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Pd630_LPD00852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
Motif
Other DBs
NCBI-ProteinID:
AHK28086
LinkDB
All DBs
Position
866327..867712
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AA seq
461 aa
AA seq
DB search
MGSLAGRHRRNMRILFASVVVVVLAMAAVLVVAVTAHNASAGRGELTIAPEPAPITAAPQ
VTPVPDDAPMPTAQGIAAAVGPAAANPDLGKFSGTVADAVTGQVLWSVNPQTPMTPASTT
KVLTAGSALLALPSDRRVTTKVVQGATPGEIVLVAGGDPTLTAKPVGENGYYPGAAHISQ
LVDQIRNAGVQVTSIVVDTSIYSGDTMAQGWFPTDVGAGFITPTEPIMIDGGRADPLVDE
SPRSSTPALDAGRTLAGALGVAPSAVTSGVAAPGAATVASVQSAPLRDRLRQMMEHSDNV
LAEAIGREVAMNAGAEASFEGAVATIGQTLTAAGFDLSGFTLHDASGLSVDDRIAPHTLD
QVLTAAAGDGNPALRPMLDYLPVAGATGSLSDRYASGNRTGAGWVRAKTGTLSTASALAG
YVVDQNGRVLTFALMSNDRPPEVSRPALDALAAALRTCGCQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgttggcgggacgccaccgtcggaacatgcgaattctgttcgcgtcggtcgtc
gtcgtggtgctcgcgatggcggctgttctggtggtcgcggtgacggcgcacaacgcgtcg
gcgggccgcggtgaactgacgatcgcgcccgaaccggcaccgatcacggcagccccgcag
gtcacgccggtgccggacgacgcgccgatgccgacggcgcaggggatcgccgccgcggtc
ggtccggccgccgccaaccccgacctcggcaagttcagcggaacggtcgccgacgcggtc
accggtcaggtcctgtggagcgtcaacccgcagaccccgatgaccccggcgtcgaccacc
aaggtcctcaccgcgggatccgcgctgctggcgctgccgtccgaccgtcgtgtgacgacg
aaggtggtgcagggggcgactcccggcgagatcgtcctcgtcgccggtggtgatcccact
ctcaccgcgaagccggtcggggagaacggctactacccgggtgcggcgcacatctcgcag
ctggtcgatcagatccggaacgcgggcgtccaggtgacgagcatcgtggtcgacaccagc
atctactcgggcgacaccatggcgcaggggtggttcccgacggacgtcggcgccggattc
atcacccccaccgaaccgatcatgatcgacggcggacgggccgacccgctcgtagacgag
tcgccgcgcagttcgacacccgcgctcgacgccgggcggacgctcgccggtgcgctcggc
gtcgccccgtcggcggtcacgtcgggggtcgcggcgcccggtgcggctaccgtggcgagt
gtgcagtccgcgccgctgcgcgaccggttgcggcagatgatggaacactcggacaatgtg
cttgccgaagcgatcgggcgggaggttgccatgaatgccggcgcggaagcatcgttcgag
ggcgccgtcgcgaccatcggccagacgctgaccgcggccggattcgatctgtcggggttc
accctgcacgacgcgagcgggttgtccgtcgacgatcgcatcgcgccgcacacactcgac
caggtcctcacggcggccgcgggcgacggcaatcccgccctgcggccgatgctcgactac
ctgccggtggccggcgccacgggcagcctgtccgaccgctacgcgtcggggaaccgcacg
ggcgccggatgggtgcgggcgaagaccggcaccctgtccacggccagcgcgctcgccggc
tacgtggtggaccagaacgggcgggtgctgacgttcgcgctgatgtccaacgaccgcccg
ccggaggtcagccgtcccgcactcgacgcacttgccgctgcgctccgcacgtgcgggtgc
cagtga
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