Rhodococcus opacus PD630: Pd630_LPD04033
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Entry
Pd630_LPD04033 CDS
T03071
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pd630_LPD04033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD04033
Enzymes [BR:
roa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pd630_LPD04033
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pd630_LPD04033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
NTP_transf_5
Motif
Other DBs
NCBI-ProteinID:
AHK31246
LinkDB
All DBs
Position
4226095..4227036
Genome browser
AA seq
313 aa
AA seq
DB search
MLATLGQLPGGAGWAFEMKWDGQRAIATVDNGVSRLFSRNGNDITATFPELAVPIVAALD
GREATLDGEIVALDANGRPSFSRLQRRMHVLSPIAQLRNEVPVTYYVFDVLALDGKSTTG
LPYLRRRAELTDLALSGPRLQVPPYWTDVDGEEMLDLARRHHLEGAVAKRVDSTYQPGRR
SPAWIKQPLRANTEGIVVGWVDGTGAARDGIGSLLLAAYDDDHQLVYIGHVGTGFTTATR
KSLREQLTALERPTSPLASPPPARETKDARWVEPQLVGDVEYREYTSGRLRHPSWKGLRD
DKTPSEVDLPGRH
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacactcggccaacttcccggcggtgcggggtgggcgttcgaaatgaagtgg
gatggtcaacgcgccatcgccaccgtcgacaacggtgtatcccggctgttcagccgcaac
ggaaatgacatcactgcaacctttccggagttggccgtgccgatcgtggccgcgttggac
ggacgtgaggcaaccctcgacggagaaatcgtcgcgctcgacgcgaacggccggccgtcg
ttcagtcgcctccagcggcgcatgcacgtgctgtcccccatcgcacaactccgcaacgag
gtgcccgtcacgtactacgtgttcgacgtcctagcccttgacggcaaatcgacgaccggg
ctgccttacctgcggcgacgggccgaactcaccgaccttgcgctgtccgggccccgcctg
caggtgccgccgtactggaccgacgtcgacggcgaggagatgctcgatctcgcccgcagg
caccatctcgagggcgcagtcgcaaaacgcgtcgactcgacgtatcaacccggtcgccgc
tcccctgcctggatcaagcaaccgctacgcgccaacaccgaagggatcgtcgtcggctgg
gtcgacggcaccggtgccgcccgcgacggcatcggatcactactcctcgccgcgtatgac
gacgaccaccagctggtgtacatcgggcatgtcggcaccggattcaccaccgcgacaagg
aaatcgctacgggagcagctcacggcgctggaacgaccgacgagtcctctggcgtcgccg
ccacctgcgcgggagaccaaggacgcacgctgggtcgaaccgcagttggtcggcgacgtc
gagtaccgcgagtacaccagcgggcggttgcgccaccccagctggaaaggcctgcgtgac
gacaagacgcccagcgaagtcgacttgcccggtcggcactga
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