Roseateles amylovorans: N4261_11630
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Entry
N4261_11630 CDS
T08701
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
roi
Roseateles amylovorans
Pathway
roi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4261_11630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roi03019
]
N4261_11630
Enzymes [BR:
roi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N4261_11630
Messenger RNA biogenesis [BR:
roi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N4261_11630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
ChuX_HutX
DegT_DnrJ_EryC1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXH80473
LinkDB
All DBs
Position
complement(2739789..2741333)
Genome browser
AA seq
514 aa
AA seq
DB search
MSFDALGLSQPLLRAIADAGYTTPTPIQSQAIPAVLSGGDLMAGAQTGTGKTAGFTLPVL
QRLSVGKPVRDARGRLAVRALVLTPTRELAAQVEESVRTYGKYLPLTSMVMFGGVGMQPQ
IDKLRKGVDILVATPGRLLDHAQQGTLDLSKVEILVLDEADRMLDMGFIHDIKKVLALLP
QKKQSLLFSATFSDEIKALADRLLDKPGLIEVARRNATADTIAQKVHPVDRDKKKELLAH
LIRQHDWHQVLVFTRMKHGANRLAEFLDKQGITAMAIHGNKSQGARTKALAEFKSGDLQV
LVATDIAARGIDIDQLPHVVNYELPNVSEDYVHRIGRTGRAGAQGEALSLVCVDEEGFLR
DIQKLIKREIPREVVPGFEPDPNAKPEPIVLGRMVLNGGVGKTGGSPRPSGGGGGGRRGG
GGQGGGGRAPQGQGRAAQGQSQGRGQGGGGSGGQGQGQRSQAQGQRPAGQGQGGQGGQGQ
GQGQRQGERRHGGGHGSQGNRPAGAALTRPKSSS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgacgcactgggcctgtcccagcccctgcttcgcgcaatcgccgacgccggt
tacaccacccccaccccgatccaaagccaggccattccggccgtcctcagcggcggcgac
ctgatggccggcgcccagaccggcaccggcaagaccgccggtttcaccctgccggtgctg
caacgactgtccgtcggcaagccggtgcgcgacgcccgcggccgcctggccgtgcgtgcc
ctggtcctgaccccgacccgtgaactggccgcgcaggtcgaagaaagcgtgcgcacctac
ggcaaatacctgccgctcaccagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcgacaagctccgcaagggcgtcgacatcctggtggccacgcccggccgtctgctggac
cacgcacagcaaggcacgctggacctgtccaaggtcgagatcctggtgctggacgaagcc
gaccgcatgctggacatgggcttcatccacgacatcaagaaggtgctggccctgctgccg
cagaagaagcagagcctgctgttctcggccaccttcagcgacgagatcaaggccctggcc
gatcgcctgctggacaagccgggcctgatcgaagttgcccgccgcaatgccaccgccgac
accatcgcgcagaaggtgcatccggtcgaccgcgacaagaagaaggaactgttggcccat
ctgatccgtcagcacgactggcaccaggtgctggtcttcacccgcatgaagcacggcgcc
aaccgcctggccgagttcctggacaagcaaggcatcaccgccatggcgatccacggcaac
aagagccagggtgcccgcaccaaggccctggccgagttcaagagcggcgacctgcaggtg
ctggtggccaccgacatcgctgcgcgcggcatcgacatcgaccagttgccgcatgtcgtc
aactacgagctgcccaatgtgtcggaggactatgtccaccgcatcggccggaccggccgt
gccggcgcccagggtgaagcgctgtcgctggtctgcgtggacgaggaaggcttcctgcgt
gacatccagaagctgatcaagcgcgagattccgcgcgaggtcgtcccgggcttcgaaccc
gatccgaatgccaagcccgagccgatcgtgctgggtcgcatggtcttgaacggcggtgtc
ggcaagaccggcggatcgccgcgtcccagcggcggcggcggtggcggccgacgcggtggg
ggcggtcagggcggcggcggccgtgcaccgcaaggccagggtcgcgcggcgcaaggccag
agccaaggccgcggccaaggtggcggcggcagcggtggccagggtcagggccagcgctcg
caagcgcagggtcagcgcccggccggtcaaggccaaggcggccagggtggacagggccaa
ggccaaggccagcgccagggtgaacgtcgccacggcggcggccacggcagccagggcaat
cgcccggccggtgccgcgctgacgcgtccgaagtcctcctcctga
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