Rosistilla oblonga: CA51_24010
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Entry
CA51_24010 CDS
T06941
Symbol
omcB_1
Name
(GenBank) Large cysteine-rich periplasmic protein omcB precursor
KO
K20276
large repetitive protein
Organism
rol
Rosistilla oblonga
Pathway
rol02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rol00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CA51_24010 (omcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF11
NPCBM_assoc
CARDB
TRAP_beta
bMG10
Integrin_A_Ig_3
SpaA
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
QDV12516
LinkDB
All DBs
Position
3263487..3268832
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AA seq
1781 aa
AA seq
DB search
MGRSKDIVSKIRGLSNRRVRDSKRREKQSSRFRPRFEQLESRRLLAVATDLANISGIVYD
DVDGNGLSAGEEIAGATVNVYRDNGNGIFEPGAGDGSPVATDISDASGRYTLTGLTAGSY
FVQQPAQTIGGNSLSQQVSPALTITAAQAEGVLVRTIDSFDGTTDLVSDTANDGVRVASS
LADGAALGGERDIFVNKTSVNGLVRISVNDPLQPGILSFDSFASGDGQWNVSWDGIDGDA
LTLDDTGLGGVDLTSAGTAAGFRLQIGADNLGGTAIVRVYSDDGNGATTSRSSQTTLVIP
DTGGSATSTEYIPFSAFIGTADFTQVGAIELDITGVPNINGTAELVGAIGPTTITQDFDN
FEQADLSLTKVSNTAAPVVGQTVSFTVSVTNTGPNTATGVEVLDQLPTGITFGSATPSQG
SYNNATGIWTVGSITNGATATLQISGTLATAGDKTNTAEIIAADQTDPDSTPGNGLPSED
DQASVTIAPQLIDLSLLKAVDNASPNVGEEVTFTLTINNAGPSTATGVAVTDALPGGLTF
VSASPSQGNFSSTGGLWTVGDLASGGTATLNLTARVISAGTKTNSAQVTAAGQADIDSTP
NNNDPTEDDQASVAVTPQVADLSLTKVADSTSPNVSQNVVYTITLNNAGPSAATGVQVTD
LLPSGIAFVSAQPSIGTYDSNSGLWTVGSIGSNNNQTLILIGRVDSVGAKTNVAEVIASD
QFDSDSTPGNGATTEDDRAEVTVTPQTADLSLAKTVNDATPNVGENVTFTLTVSNSGPNQ
ATGVRVLDELPAGMTFVSSSGSQGVYDSGTGVWNVGTISNGGTATLRIVATAGNAGLNAN
SAEIIASDQLDPDSTPGNSVAGEDDTAEVTFTAEIVDLSLAKTVNTAQPNLGENVTFTIT
VNNAGPDAATNVVVVDRLPTGLTFVSATPSQGTFNTTTRQWSIPTVPAFGSVTMTLVARV
NAATTLTNIVEILDADQPDIDSTPGNNDPSEDDQAVASITTRQADLSLTKTVDNANPNVG
DNVTFTIDINNDGPDAATGVAVLDTLPTGMTFVSASATLGTFDSASRTWSVGTVPNNSGA
QLEIVARVDTRGIKTNTAQVSASEVADPDSTPGNNLTAEDDQASVSLTPQLVDLALTKGV
DVAQPNIGDNVVYNLAMTNTGTDTATGVAVTDTLPVGVTFISAIASLGNYDDATGVWNVG
SVARGSTPTLEITVRVDTPDTKTNVAEITATDQLDVDSTPGNGITTEDDYATVDITPLSA
DLSLTKTVDDPKPNVGENVTFTITVTNSGPDAATGILVEDQLPPDVVFVSATASRGSYNE
LTGIWDLGALGNTGTATLQIVANGTNVIEKVNQAEIVASDTRDPDSTPGNNDSSEDDQAS
VSIEPQEIDLSLTKTIDNNAPNRGENVVYTLVVTNDGPSDATGIEITDRLPEGMTFVSAA
VAQGAFNASTGVWTTGSLAQGDSATLRLTATVNTTGTVLNTAEITAADQPDTDSTPGNNN
ITEDDFSSAIFVTPVADLGLTKIVADSTPLASEDVVFTITVVNNGPDDATGVVVRDLLPP
GLLFQSSTETQGTYDSNTGLWNVGGIPNTGTATMTIRARINSADPSTNTAEIVAVAQFDP
DSTPDNGIAGEDDQASVTVTPEVSDLSVTAAVDNPTPELGDSVVTTFTVSNAGPDVATNV
VLSLPIPPGFTFVRADVSQGTFDAATGLWTLGTLIVGETRTIRITERVDAFGIRPHNIEV
QSVDQIDPDSTPGNMSLVEDDYASVMIQAPRNLSKRLFLSR
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgctctaaggatatcgtgtcgaaaattcgtggcctctccaaccgtcgggtccgc
gatagcaaacgccgcgaaaaacaaagcagccgctttcggccgcgtttcgaacagctcgaa
tcgcggcgtctgctggccgtcgcgaccgacttggccaacatctccgggatcgtctacgac
gatgtcgacggcaatgggctgagtgctggcgaggagatcgccggggcgacggtgaacgtc
taccgcgacaacggcaacggaatcttcgagccaggcgccggggacggatcgcccgtggcg
accgacatcagcgatgccagcggtcgctacacgctgaccgggctgacggcaggcagctat
tttgtgcaacagccagcccagacgatcggcggcaattcgctgagtcagcaggtcagtcca
gcgctcacgatcaccgcagctcaagccgaaggggttttggttcgcacgatcgattcgttt
gatggaacgaccgatctggtcagcgacaccgcgaacgacggcgtccgcgtcgcctccagc
ttggccgatggtgcggcgttgggtggcgaacgcgatatcttcgtcaacaagacctcggtc
aacggtttggttcggatctcggtcaacgatccgttgcagcccggcatcctttcgttcgac
agctttgcttcgggcgatggtcagtggaacgtctcttgggatggaatcgatggagacgcg
ttgacgctggacgacaccggcctcggtggcgtcgatctgacttcagccggtaccgctgcc
ggttttcggttgcagattggtgcggataaccttggcggaacggcgatcgttcgcgtctac
agcgacgatggcaacggagcgacgacgtcgcgatcgagccagacgacgctggtgattccc
gacacgggcggttcagcaaccagcaccgaatacatcccattcagcgcgttcatcggaacg
gccgatttcacacaggtcggtgcgatcgaactggatatcaccggggtaccgaacatcaac
gggacggcggaacttgtcggcgcgatcggtccgacgacgatcacgcaggacttcgacaat
ttcgaacaagccgatctcagtttgacgaaggtctccaacacggcggctccagtcgtcggt
cagaccgtttcgtttaccgtctcggtcaccaacaccggtcccaacacggcgaccggtgtc
gaagtgctggaccaattgccaacggggatcacgtttggcagcgccactccatcgcagggc
agctacaacaacgcgacggggatttggaccgttggcagcatcaccaacggggcgaccgcg
acgctgcagatcagcggtacgctggcaaccgctggcgataagaccaatacggcggagatc
atcgcggcggatcagaccgatcccgacagcactccggggaacggactacccagcgaagac
gatcaagcgagcgtgacgatcgccccgcaattaatcgatctgtcgttgctgaaagctgtc
gacaacgcgtcgccgaacgttggcgaagaggtcacgtttacgctgacgatcaacaacgcc
ggccccagcaccgccacgggagttgccgtgaccgatgcgttgccgggcggactgaccttc
gtttcggcaagtccttcgcaagggaacttcagcagcaccggaggtctatggaccgtcggg
gatctggccagcggcggaacggcgacgttgaacctgacagctcgcgttatctctgccggc
acgaagacgaattcggcgcaagtgacagcggccgggcaagctgatatcgacagcacgccc
aacaacaacgacccgaccgaagacgatcaagcctcggtcgcggtgactccgcaggttgcc
gatctttcgttgacgaaggtcgccgattcgacgtctcccaatgtcagccaaaacgtcgtc
tatacgatcactctgaacaacgctggcccgagcgccgcgactggtgttcaagtcaccgat
ctgctcccctcgggaatcgcttttgtttcggctcaaccgagcatcggtacctacgacagc
aacagcggactgtggaccgttggttcgatcggcagcaacaacaaccagacgttgatcttg
atcggccgcgtcgattcggtcggggcaaaaacaaacgttgccgaagttatcgcgtcggac
cagttcgacagcgattcgactcccggtaatggagcgacgaccgaagatgatcgggccgag
gtgacggtgactccgcaaaccgccgacctctcgctcgcgaagaccgtcaacgatgcgacg
ccaaacgttggcgaaaacgtgacgtttacgctgaccgtttccaacagtggccccaaccaa
gcgaccggcgttcgcgttctggatgaattgccggccggaatgacctttgtctcctcctcg
ggcagccaaggtgtttacgacagcgggaccggcgtttggaacgtcggcacgatctccaac
ggcggaacggcaacgctgcggatcgtcgccacggcaggcaacgcgggcttgaacgcaaac
tccgcagagatcatcgcgtcggatcaattggatcccgattcgactcccggcaatagcgtc
gctggcgaggacgataccgcggaggtgacgttcaccgccgagatcgtcgacctatcgctg
gccaagaccgtcaacacggcgcaaccaaaccttggcgaaaacgtcacgtttacgatcacc
gttaacaacgcggggcccgacgcggcgaccaacgtcgtggttgtcgatcgcttgccgacg
gggctgactttcgtctcggcaacgcccagccagggaacgttcaacacgacgacgcgacaa
tggtcgatccccaccgtgcctgcctttggttcggtcacgatgacgctggtcgcccgcgtc
aacgctgcgacgacattgactaacattgtcgagattctcgatgccgaccaacccgacatc
gattcgactcccggcaacaacgaccctagcgaagacgatcaagctgtcgcgtcgatcacg
acccggcaagcggatctctcgctgacgaagaccgtcgacaacgccaatccgaacgtcggc
gataacgtcacatttacgatcgacatcaacaatgacggccccgatgcggcgactggtgtc
gcggttctcgatacgctgccgacggggatgaccttcgtttctgccagcgccaccctgggt
accttcgattcggccagtcgcacctggtcggttgggaccgttcccaataattcgggcgcc
caattggagatcgtcgcccgcgtcgatactcgcggaatcaaaaccaacacggcgcaggtg
agtgcgtcggaggtggcagatcccgattcgactcccggcaataacttgacggccgaagac
gatcaagccagcgtttcgctgacgcctcaattggtcgacctcgcgctgactaaaggcgtc
gacgtggcacagcccaacatcggcgataacgtcgtctacaacttggcaatgacaaacacg
gggaccgacaccgcgacgggcgttgcggtgaccgatacgttgccagtcggagtgactttc
atttcggcgatcgccagtcttgggaactatgacgatgcgaccggcgtatggaacgtaggg
tcagtcgcccgcggatcgacgccaacgttggagattacggtccgcgtcgacacgcccgat
acaaagaccaacgtagcggagatcaccgcgacagaccaattggatgtcgattcgacgcct
ggcaacgggatcacgaccgaagacgattacgccactgtcgacatcacgcctctttcggct
gacctttcgttgaccaaaaccgtcgacgatccgaagcccaacgtcggcgaaaacgtcacc
ttcacgatcacggttacgaactcgggccccgacgcagcgacagggattttggtcgaagac
cagttgccaccggatgtcgtcttcgtttcggcgaccgcatcgcgcggcagctacaacgag
ctgacagggatctgggatttgggggcgttgggaaacacggggactgcgacgttgcagatc
gtggccaacggaaccaatgtgatcgagaaggtcaatcaagcggagatcgttgcctcagac
actcgcgatcccgattcgactcccggcaacaatgacagcagcgaagacgatcaggcttcg
gtttcgatcgagccgcaggagatcgatttgtcgttgacaaagacgatcgacaacaatgca
cccaaccggggtgaaaacgtcgtctacaccttggttgtcaccaacgatggtccctccgac
gcgacggggatcgaaatcaccgaccggttgcccgaagggatgacgtttgtttccgccgcg
gttgctcagggagctttcaacgcttcgacgggtgtatggacgacgggcagcctagcacaa
ggcgattcggcgacgttgcggttgacggcgaccgtcaatacaacgggcacggtgctcaac
acggcagagatcaccgccgcggatcaacccgataccgactcgacgccgggtaacaacaac
atcaccgaagacgacttctccagcgccatcttcgtcaccccggtcgccgacttgggattg
accaagatcgttgccgattcgacgccgctggccagcgaggacgttgtctttacgatcacc
gtcgtcaacaacggccccgacgatgcgactggcgtcgttgttcgcgacctgttgccgccg
ggattgctgttccaatcttcgaccgaaacccaaggaacctacgattcgaacaccgggttg
tggaacgtcggtgggattcccaatacgggaaccgccacgatgacgattcgggctcggatc
aacagcgccgaccctagcaccaacacggcggagatcgttgcggtagcgcagttcgacccc
gattcgactcccgacaacgggatcgcgggggaagatgatcaagccagcgtgacggtgact
cccgaagtgagcgacctctcggttaccgcggcggtcgacaacccgacaccggaactgggg
gacagcgtcgtgacgacgttcaccgtcagtaatgccggacccgatgtggcgacaaacgtc
gtcctttcactgccgattccccccggtttcaccttcgtgcgagcggatgtcagccaagga
acgtttgatgccgcaacgggactttggacgctgggaactttgatcgttggcgaaacccgc
acaattcgtatcaccgaacgggtcgatgcgtttggcatccgtccgcataacatcgaagtc
caatcggtcgatcaaatcgatcccgatagcacgccggggaacatgtcgttggtcgaagac
gattacgccagcgtaatgatccaggctccacgcaacctttcgaagcggttgttcctttcg
cgctga
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