Rhodococcus opacus B4: ROP_51120
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Entry
ROP_51120 CDS
T00882
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ROP_51120 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_51120 (ligD)
Enzymes [BR:
rop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ROP_51120 (ligD)
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ROP_51120 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAH53359
NITE:
ROP_51120
UniProt:
C1ATU5
LinkDB
All DBs
Position
5527049..5529325
Genome browser
AA seq
758 aa
AA seq
DB search
MATAGTRQLTVDGHRLSLTNLGKVLYPESGTVKGEVIDYYSRIAPAMLPHVVDRPATRKR
WPNGVDSEPFFEKNLAASAPGWLERRALEHSDRSVHYPLLNSVAALVWAGQQAALELHVP
QWRFDGSHRGPATRIVFDLDPGPGVGLVECAEVARAVRDLVANLGWTAYPVTSGSKGIHL
YVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKSVRAGKVFVDWSQNNPSKTTIA
PYSLRGRSEPYVAAPRSWDELDDPGLRQLRFEEVLERWESDGDLLAGLDPPIEDDTALAE
YRRKRDPGRTPEPMPHTVQPGAGNSFVIQEHHARRLHYDLRLERDGVLVSWAVPKNVPTT
TGENRLAVHTEDHPLEYLTFSGSIPKGEYGGGQMTIWDTGTYDTEKWRDDEVIVQLHGEQ
VEGRFALIRTKGDQWLMHLMKDQSPGGSRSSELPRGLSPMLASPGTLDGLGADEWAFEGK
WDGIRVIAEISGGELKMTSRAGNDKTRDYAQLGWLADSLEDHEVVLDGEVVAFDERGVAN
FGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGSAQEA
LDESRRKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSSGIGSV
LLGVPEDEGLRYIGRVGTGFTERDLQELAATLGPLETDTSPFVEDLPTADRKGAVWVTPT
LVAEVRFMDWTGSRRLRHPSWRGLRNDKAPEDVEVESS
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtggccactgcgggaactcggcaactgaccgtcgacgggcatcgcctgtctctgaccaac
ctcggcaaggtgctctacccggagtcgggcaccgtgaagggcgaggtgatcgactactac
tcgcggatcgccccggccatgctgccgcacgtcgtggaccgtcccgccacccgcaaacgc
tggcccaacggggtggacagcgagccgttcttcgagaagaacctcgcggcctccgcgccg
gggtggctggagcgtcgcgcactcgagcactcggaccgttcggtgcactacccgcttctg
aactcggtcgcggccctcgtgtgggcgggacagcaggccgcactcgaactgcacgtgccg
cagtggcggttcgacgggtcgcaccggggtccggcgacccgcatcgtcttcgacctcgac
cccggccccggtgtgggcctcgtcgaatgcgcggaggtggcgcgggccgtgcgcgacctg
gtcgcgaacctcggctggaccgcgtacccggtcaccagcggcagcaagggtattcacctg
tacgtgccgctcgaccggaaactggacggttcgggcgcgtcgaccgtcgcgaaacaggtg
gcgacggggctggagaagctgcgtcccgaactcgtcaccgcgaccatggccaagtcggtg
cgcgcgggcaaggtattcgtcgactggagtcagaacaatccgtccaagaccaccatcgcc
ccgtactcgctgcgcgggcgctccgagccgtacgtcgcggcgccgcggagctgggacgaa
ctcgacgaccccggcctacgacagctgaggttcgaggaagtgctcgaacggtgggagtcg
gacggcgacctgctcgccggactcgatccgccgatcgaggacgacaccgccctcgccgag
taccgccgcaagcgtgatcccggacggacacccgagccgatgccgcacacggtgcagccg
ggggcgggcaacagcttcgtcatccaggaacatcacgcccggcgcctccactacgacctg
cggctcgaacgggacggcgtcctcgtgtcgtgggcggtgccgaagaacgtgccgacgacg
acgggggagaatcgcctggccgtgcacaccgaggatcatccgctcgaatacctcacgttc
tccgggagcatccccaagggtgagtacggcggcggccagatgacgatctgggacacggga
acctacgacacggagaagtggcgggacgacgaggtgatcgtccagctgcacggtgagcag
gtggagggccggttcgcgctgatccgcacgaagggcgaccagtggctgatgcacctgatg
aaggaccagtccccgggcgggtcgcggtcgtcggagctgccgcgcgggttgtcgccgatg
ctcgcgagccccggcaccctcgacggcctcggcgccgacgagtgggctttcgaagggaag
tgggacggcatcagggtgatcgccgagatcagtggcggcgaactgaagatgacgagccgc
gcgggtaacgacaagacccgggactacgcgcaattgggttggctggcagattctctcgaa
gatcacgaggtggtcctcgacggtgaagtggtcgcgttcgacgagcggggtgtcgcgaac
ttcggcctgttgcagcagggcaacgagccgcacttcctcgcgttcgacgtgctgtacctc
gacggagtgtcgttgctgcgcaagaagtacaccgatcggcgccgcgtcctcgaggcgctg
gcagccaaggtggacgacctcgtcgttcccccgcaactgcacgggtccgcgcaggaagcc
ctggacgagagccgtcgcaaggggtgggagggtgtggtggccaaacgccgcgaatccgtg
tacctgccgggcaagcgggggtcgagctggatcaaggtgaagaactggcgcacacaggaa
gccgtgatcggcgggtggcgccgcggccagggcgggcggtccagcggaatcggttcggtg
ctgctcggcgtccccgaggacgaggggctgcgctatatcggacgcgtcggaaccggcttc
accgaacgggatctgcaggaactcgcagccaccctgggaccgctcgaaaccgacacctcc
ccgttcgtcgaagacctgcccaccgccgaccgcaagggggccgtgtgggtgacccccacc
ctggtcgcggaggtgcggttcatggactggaccggctcgcgaagactgcggcaccccagc
tggcgtgggctccgaaacgacaaggcgcctgaagatgtcgaggtggagtcctcatga
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