Rhodococcus opacus B4: ROP_pROB01-05350
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Entry
ROP_pROB01-05350 CDS
T00882
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ROP_pROB01-05350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_pROB01-05350
Enzymes [BR:
rop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ROP_pROB01-05350
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ROP_pROB01-05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BAH56034
NITE:
ROP_pROB01-05350
UniProt:
C1BCH9
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All DBs
Position
pROB01:501418..502413
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AA seq
331 aa
AA seq
DB search
MSGAGNRLIAPMLSTPGEPPVEMDGWAAEMKYDGFRLLAGVGGGAHPVLWTRNLNVVTSS
YPEVTEALTEAFGGHGRIVFDGEIVALTQGRPSFARLQKRANTLRPTTALRRQVPVIFLP
FDVLRLDGDDLMGAPYLDRRAALTDLGHQLQGAVLPIQIPPHWEGIEGMVMLEAVRSSGM
EGAVFKRVSSLYLPGQRTRAWRKVLIRTRVSCVVLGWIPAGGMQHNMVGALVLGAYDDQG
ALRYVGHVGTGFTQAGRRQLGEQLAALERPTSPIVAESAAAEQHGVVRWVHPIVVVDIDI
REYGPGGLRHPSYKGQRPDLDPEGVKWDSLQ
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgagcggagctgggaatcggctgatcgcgccgatgctgtccacaccgggtgaaccaccg
gtggaaatggacggctgggcggccgaaatgaagtacgacggcttccgcctattagctggg
gtcggtggcggcgcgcatccggtgctgtggacccgcaacctcaacgttgtcacttcctcc
tacccggaggtgaccgaggcgctgaccgaggcattcggtggtcacgggcgcatcgtcttc
gacggtgaaatcgtcgccctcacgcaaggtcggccttcgttcgcacgcctgcagaagcgg
gcgaacaccctgcgcccgaccaccgccctgcgccggcaggtaccggtcattttcctgccg
ttcgatgtgctccggctcgacggggacgacctgatgggtgccccgtacctcgatcgccgc
gccgccctcaccgacctcggccaccaactccagggcgctgtcctcccgatccaaatccca
ccacattgggaaggcatcgagggtatggtcatgctcgaagcggttcgcagctcgggtatg
gaaggtgctgtgttcaaacgtgtttcgtcgctgtaccttcccggtcagcgtacccgggcg
tggcggaaggtgttgatccgtacccgggtgagctgcgtggttctcgggtggattcctgct
ggcgggatgcagcacaacatggttggcgcccttgtgctcggcgcctacgacgaccagggt
gcactccggtatgtagggcacgtcgggaccggtttcactcaggctgggcgccggcagctc
ggtgagcaactggctgccctcgaacgtcccaccagcccgatcgtcgctgagtccgcggcc
gcggaacagcacggtgtagtgcggtgggtccacccgattgtggtggtcgacatagatatc
cgcgaatacgggcccggagggctccggcacccctcgtacaagggccaacgacccgatctc
gatccggaaggggtcaaatgggattcattgcagtag
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