Rahnella sikkimica: BV494_14285
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Entry
BV494_14285 CDS
T05331
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rox
Rahnella sikkimica
Pathway
rox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV494_14285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rox03019
]
BV494_14285
03009 Ribosome biogenesis [BR:
rox03009
]
BV494_14285
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BV494_14285
Messenger RNA biogenesis [BR:
rox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV494_14285
Ribosome biogenesis [BR:
rox03009
]
Prokaryotic type
rRNA helicases
BV494_14285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_19
DRTGG
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVF36024
UniProt:
A0A2L1UT13
LinkDB
All DBs
Position
complement(3104736..3106682)
Genome browser
AA seq
648 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPA
DHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVEIPTADVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDIE
TLAAALLKMAQGERPLIVPADQPFKSRPPRREFEDRGDRGDRGDRRDRPARSNSDRPARD
GDRPARDGDSPRRERREAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF
GTHSTIELPKGMPGEILSHFTRTRILNKPMNMQLIGDAQPQAPRRDRPAGAGGERRGTGA
PRPFNGERREGGRGNGAPRSFSGERREGASAAGERRPPSRAPRRTTDA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgactgatttgggctacgaaaaaccatcaccaatccaggctgagtgtattcctcac
ctgttaaatggccgcgacgttctgggtatggctcagaccggttccggtaaaacggcagcg
ttctccttaccgctgctgcacaacatcgatgcttcactgaaagcaccacaaattcttgtt
ctggcacccacccgcgaactggcggttcaggttgctgaagcaatgactgatttctctaaa
catatgcatggcgtgaatgtggttgccctttacggcggccagcgctatgacgttcagctg
cgcgctctgcgtcaggggccacaagttgttgtgggtaccccaggtcgcctgctggaccac
ctgaaacgcggcaccctgaacctttctaacctgaaaggtttggtgctggatgaagccgat
gaaatgctgcgtatgggcttcatcgaagacgtcgaaactatcatggcgcagatcccggct
gaccatcagaccgcgctgttctctgcaaccatgccagaagctatccgtcgcatcacccgt
cgcttcatgaaagatccgcaggaagtgcgtatccagtcaagcgtgacgacccgtccggac
atcagccagagctactggtctgtatacggtctgcgtaaaaacgaagcgctggttcgtttc
ctggaagctgaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcaacgctg
gaagtggcagaagcactggaacgtagcggctacaacagtgctgcactgaacggtgacatg
aaccaggccctgcgtgagcagactctggaacgtctgaaagatggccgcctggacattctg
atcgcaaccgacgtggcagcacgtggtctcgacgtagaacgtatcagcctggttgttaac
tacgacatcccgatggactcagaatcttacgttcaccgtatcggccgtaccggtcgtgct
ggtcgtgcaggtcgcgcattgctgttcgttgagaaccgcgaacgtcgtctgctgcgcaac
attgaacgtacaatgaagctgaccattccagaagttgaaatcccaactgcagacgttctg
ggcgaacgtcgtctggcgaagtttgcagcaaaagttcagcaacaactggaaagcagcgat
ctggatcagtaccgcgctctgctggcaaaactgcaacctgcagaagagctggacatcgaa
acgctggctgcggcactgctgaaaatggcacagggcgaacgtcctctgatcgttccggct
gatcagccgttcaaaagccgtccaccgcgtcgtgaattcgaagatcgtggtgaccgcggt
gatcgtggcgatcgtcgtgaccgtccggctcgcagtaacagcgatcgtccggcacgtgat
ggtgaccgtcctgcgcgtgatggcgatagcccacgtcgtgaacgtcgcgaagctggcgat
atggaactgtatcgtatcgaagtgggtcgcgatgatggcgttgaagttcgtcatatcgtt
ggcgcgatcgctaacgaaggtgatatcagcagccgttacatcggtaacatcaaactgttc
ggtacgcactccactatcgaattgcctaaaggtatgccgggcgagatcctgtctcacttc
acccgtacccgcatcctgaacaaaccgatgaacatgcagttgatcggtgatgcgcagcca
caagctccgcgtcgtgaccgtccggctggtgctggcggtgagcgtcgtggtactggtgct
ccgcgtccgttcaatggcgaacgtcgtgaaggtggccgtggtaacggtgccccacgttct
ttcagcggtgaacgtcgtgaaggtgcttcagcagctggcgaacgtcgtccgccaagccgt
gcaccacgtcgtactaccgacgcataa
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