Rhodopseudomonas palustris CGA009: TX73_009255
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Entry
TX73_009255 CDS
T00153
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TX73_009255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpa03400
]
TX73_009255
Enzymes [BR:
rpa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
TX73_009255
DNA repair and recombination proteins [BR:
rpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TX73_009255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
STI1-HOP_DP
Motif
Other DBs
NCBI-ProteinID:
WCL91944
LinkDB
All DBs
Position
complement(2018692..2020179)
Genome browser
AA seq
495 aa
AA seq
DB search
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDVAGLAPHAGTFAEMA
APFIHPAQSPSPAQTFNVPARFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATD
PDVARLQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVELAAPFFARRFA
DMEWSILTPDACAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTRAMQ
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLA
HLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQPGDKEDLAGQPFVGPAGQMLDR
ALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEIKACRQWYERELAAVQPLLVV
AMGATAAQSVLGRITPINKTRGHLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
DLKLIAAHLKKAHAA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcatccgcctcgacagcgacaccgacttcgacggctggcgcaaggcggcgcgg
gagctggtgctggcggacgtggcgccggcggatgtgacctggacggtggcgggcgacgag
ccggagcttttcgatgtagcggggctggcgccgcatgcggggacctttgctgaaatggcc
gcgccgttcattcatcctgcacaatccccctcccccgcgcagaccttcaacgtccctgcc
cgcttcgtcgagctggcgcacattgccatcctgcatcgcgatccgcagcgctttgcgtac
ctgtatcagttgctgtggcggctccgcgccaatcccgagctgatgcaggtggcaaccgat
ccggacgtggcgcggctgcaggcaatggccaaggcggtaaggcgcgacgagcacaagatg
cacgccttcgttcgcttccgcgagatcggccgcgagccgaagtcgcgctacgtcgcctgg
ttcgagcctgagcatcatatcgtcgagctcgccgcgccgttcttcgcacgccgcttcgcc
gatatggaatggtcgatcctgacacccgacgcctgcgcgcattgggacggccacgcgatc
gcgatcacgcccggcgtgagcaaggcgatggcgccgtcagaagatcggctggaggaaacc
tggctgacttactacgccagcatcttcaatccagcgcggctgaagaccagggcgatgcag
gccgaaatgccgaagaagtattggcgcaatctgcccgaagcggcgctgatcaaaccgctg
atcgaacacgccgagcgcaaggcgcatgcgatggtcgcggccgaggcgaccgcgccgagg
aagccgcagcgacaggagccgccgatgacgagagccgagccgaaggccgacacgctggcg
catctgcgcgaggaagcgaaagattgccgcgcctgcgacctgtggaaggacgctacccag
accgtgttcggcgaaggcccgcagcacgccaccgtgatgctggtcggcgagcagcccggc
gacaaggaagacctcgccggccagccgttcgtcggccccgccggccagatgctcgaccgc
gcgctggcagaggccggcgtcgaccgcagcaagacctacgtcaccaacgcggtgaagcac
ttcaaattcgtgccgcgtggcaagatccgcctgcaccagaagccggccacgccggagatt
aaggcctgccggcagtggtacgagcgcgagctcgccgcggtgcagccgctgctggtggtg
gcgatgggcgccaccgcggcgcagagcgtgctcggcaggatcaccccgatcaacaagacc
cgcggccacctgatcgaccgcgacgacggcccgcaggtgctggtgacggtgcatccgtcc
tatctgctgcgcctgcccgacgccgacgccaaggcgcgcgaatacgctcgcttcgtcgaa
gatctgaagctcatcgccgcacatctgaagaaggcgcatgcggcgtag
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