Rhodopseudomonas palustris CGA009: TX73_018915
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Entry
TX73_018915 CDS
T00153
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TX73_018915 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpa03400
]
TX73_018915 (ligD)
Enzymes [BR:
rpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TX73_018915 (ligD)
DNA repair and recombination proteins [BR:
rpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TX73_018915 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WCL93827
LinkDB
All DBs
Position
complement(4122047..4124791)
Genome browser
AA seq
914 aa
AA seq
DB search
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERGF
KTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGDANTVLDEDRSV
ASGRAMDTIAEGKGKAPKPFMLRKAATRVTADAVWDSNTGLAADKRAETGAAKKVAKSKP
TTSAKAKAAKSAKPASRSKPAAQGKRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFGAIADEAASLPDAIIDTEVVALDSHGQPDFASLQAA
LSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEHFDT
GGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDDLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTREVHWVTPD
LVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVELAEPAPMRRIAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGDWLIPHI
KGRPCSILRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGDRKPYVQIDRVEGLIAAAQIG
GVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKQRLEALGLKTFCKTTGG
KGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKRKRIGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIESVPALIKRSKAWTDYDDAAT
PLKAAIRTLTSGKT
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtggccagcaacaagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcgtggcgatgccaaggtggcgccgtcgaagcagcggcggttcgtgatccagaagcac
gacgccacccggctacactacgacctgcgcctggaatacggcggcgtcttcaagtcttgg
gcggtgaccaagggaccgtcgctcgatccgaacgacaagcgtctcgctgtcgaggtcgag
gatcatccgctcgactacggagacttcgaaggcacgattccaaagggtcagtatggcggc
ggcacggtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcgcggcttc
aagaccggcgacctgaagttcaccctgcatggcgagaagctgcatggcagctgggtgctg
gtgcggatgcggcacgaccgcagcggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgacgacgcccgcgagggcgacgccaacactgtgctcgacgaagaccgctcggtt
gcctcaggccgcgccatggacaccatcgcggaaggcaagggcaaggcaccgaagccgttc
atgttgcgcaaggcggccacgagggtcacggcggacgcggtgtgggattccaacaccggg
cttgctgccgataagcgggcggaaactggcgctgcgaagaaagtcgccaagtccaagcca
acgacttccgcgaaagcgaaagctgccaagtccgcgaagccagcgtcgcgaagtaagccg
gccgcgcaaggcaagcgcgcagccatgccggacttcgtgccgccgcagctctgcacctcg
gtggagcggccgcccggcggcgagggctggggtcacgaaatcaagttcgatggctaccgg
atgcaactccgcgtcgagcatggcgaagccaggctgctgacacgcaagggcctcgactgg
actgcgaaattcggtgcgatcgcggacgaagcggcatcgctgccggacgcgatcatcgac
accgaggtggtggcgctggattcgcacgggcagccggattttgcgtcattgcaggcggcg
ctgtccgatggtcacaccgagaatctgatctgcttcgcgttcgatctgctctacgtcgat
ggtgaggatctgcgcggcctgccgttggcggagcgcaaggcgcggcttgcggccctgctg
aaagcagcgcgcggccggcgcaaagaggggctgatccgttacgtcgagcatttcgacacg
ggcggggacgcgatcctgcaatcggcctgcaagctgtcgctcgaggggatcgtatcgaaa
aagctcgacgccgcgtatcgctccggtcgcagcgatggctggaccaaggcgaagtgccgc
gccggccatgaggtggtgatcggcggctggaagaccactaacggcaaattccgctcattg
cttgtcggcgtccatcgcggcgatgaccttgcctatgtgggtatcgtcggcaccggcttt
ggccaggacgtcgtcaaacgcatcctgcccgagctgaaagcgcacaaagcggataccagt
ccgttcagcggcgccaatgcgccgaagaagacccgtgaggtgcattgggttacgcccgat
ctcgtcgcagagatcgaatttgccggcttcaccggcgccggcatggtgcggcaggcgtcg
ttcaagggcctgcgtgccgacaagccggcggaggaggtggaggccgaggagccgcagcgg
gtcgagcttgccgagccggcaccgatgcgtcgcatcgccaaggcttcgaagtcgggcaag
ccggccgcaaagcgcgcggcgccgcgccgggccgatgccgcccgctccgaggtgatgggc
gtggcgatctccaaacccgacaaggagctgtggccggcgagcgagatcggcgccgcgatc
accaagcgcgatcttgccgattacttcgccgaggtcggcgactggctgatcccgcacatc
aaggggcggccgtgttcgatcctgcgcgcaccggacggaatcgacggcgagcacttcttc
cagcggcacgcgatgccgggaatgtcgaacctgatcgggctggcaaaggtctcaggcgac
cgtaagccgtatgtgcagatcgatcgtgtggaagggttgatcgcggcggcgcagatcggc
ggggtcgagctgcatccgtggaactgtgcgccgaaccgctacgacgtgccgggacgtctg
gtgttcgatctcgatccggcgcctgaggtcgggttcgacgaggtgatcacggccgcgaag
gaaatgaagcagcgcctcgaagcactggggctcaagactttctgcaagaccaccggcggc
aaggggctgcacgtcgtggtgccgctcaaacccgacgacggcatcgactggaaggcggcg
aagaccttcgcccagacggtgtgtgcgcagatggccgaggacagccccgagcaatatctg
ctcaacatgtcgaagcggaagaggatcggaaagatcttcctggattacttgcgcaacgac
cggatgtcgaccgcggtcgctgtgctgtcgccacgggcacgcaccggtgccacggtgtcg
atgccgctgacgtggtcgcaggtgaaggccgggctcgatcccaagcgctacacgatcgag
tcggtgcccgcgctgatcaagcgctcaaaggcgtggacggattacgacgacgccgcaact
ccgttgaaggccgcgatcaggacgctgacctcaggcaagacatag
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