Rhodopseudomonas palustris HaA2: RPB_1876
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Entry
RPB_1876 CDS
T00321
Name
(GenBank) ATP dependent DNA ligase, central
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RPB_1876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpb03400
]
RPB_1876
Enzymes [BR:
rpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RPB_1876
DNA repair and recombination proteins [BR:
rpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RPB_1876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABD06584
UniProt:
Q2IYX6
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All DBs
Position
2138794..2141538
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AA seq
914 aa
AA seq
DB search
MAASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKS
WAVTRGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERG
FKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIKHRDDDAREGKANDILDEDRS
VASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRA
AAKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFD
GYRMQLRIAHGEAALRTRKGLDWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAAL
QAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQDLLKAARGRRKEGLIRYVEH
FETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKF
RSLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTS
DVNWVTPDLVAEIEFAGFTGAGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGT
KAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAITKLDLAHYYEAVGDWLIAHI
KGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIG
GLELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGG
KGLHVVVPLQPKDDVDWKQAKIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRND
RMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLGTVPALLRKTKAWADYDESAA
PLRAALEALASSGA
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagcaagaccctcaccctgtatcgcaacaagcgcgacttcgaacagaccgcc
gagccgcgcggcgatgccgaggtcgtgccgtcgaagcggcggcgcttcgtaattcagaag
cacgacgcgacgcggctgcactacgacctgcggctcgaatatgacggcgtgttcaagtcc
tgggcggtgacgcgcggcccatcgctcgatccacgcgacaagcggctcgcggtcgaggtc
gaggaccacccgctcgactacggcgacttcgaaggcaccattcccaagggccagtacggc
ggcggcacggtgcaactctgggaccgcggctattgggactgcgatgatcccgagcggggg
ttcaagaccggcgatctgaaattcacgctcgacggcgagaaggtgcacggcagctgggtg
ctggtgcggatgcgccacgaccgcaacggcggcaagcggaccaactggctgctgatcaag
catcgcgacgacgacgcccgcgagggcaaggccaacgacattctcgacgaggatcgctcg
gtggcgtcgggccggaccatgaagcagatcgccgaaggcaaggggcgggcgccgaagccg
ttcatgacaggcaaggtggcgcgggtgaaggccgacgcggtgtgggactcgaacaagggg
ctggccgcggacgcgcgcgcggccgacgacgccggaaaggcggcgagacccaagcgcgcc
gcggcgaagaaggcgccgaagaaggccgcagcgaagtcccgcacaacgaagacgacgtcg
agggccacgcgcaagccggtgaaggtcgccgcaatgccggacttcatcccgccgcagctc
tgcacttcggtcgagcgtccgcccggcagcgacggctggcgccacgagatcaagttcgac
ggctatcggatgcagttgcgcatcgcgcacggcgaggctgcgctcaggacccgcaagggg
ctcgactggaccgcgaaatttcgggcgatcgccgacgaggctgcgggcctgccggatgcg
atcatcgacaccgagatcgtcgcgctcgatcatcacggccatcccgacttcgcggcgttg
caggcggcgctgtcggacggcgacagcgacaagctgatctgctttgcgttcgatctgctc
tatgccgacggtgaggatctacggtctttgccgctgtccgagcgcaagcagcgcctgcaa
gatctgctcaaagccgcgcgcggacgtcgcaaggaaggcctgatccgctatgtcgagcac
ttcgagaccggcggcgatgccatcctgcaatcggcctgcaagctgtcgctcgaaggcatc
gtctccaagaagctggacgcgccgtatcgctccggccgcagcgacaactggaccaaggcg
aagtgccgtgccgggcacgaggtggtgatcggcggctggaaaacgacggccggcaaattc
cggtcgctgatggtcggcgtgcagagcgacgatcgcgcggggaatcatcatttggcttac
gtcggcctggtcggcaccggattcggccaggacgtggtgaagcgcatcctgcccgagttg
aaggcgcgcgcatcaaaggacaatccgttcgcgggcgaaaacgcgccgcgcaagaccagc
gacgtgaattgggtgacaccggacctggtcgccgagatcgaattcgccggcttcaccggc
gccggcatggtgcggcaggcggcgttcaaggggctgcgcgccgacaagccggcggacgaa
gtcgtggcggagaagcctgcccaggtcgggatcgcgcggccgaagccgaagcgcgggacg
aaagcagccccggctgtgcggaaagtcgcgtccgccgccagccgcgccgaggtgatggga
atctcgatctccaagccggacaaggtgctgtggccggcgagcgagatcagcgaggcgatc
accaagctcgacctcgcacattactacgaagcggtcggcgactggctgatcgcgcacatc
aaagggcggccgtgctcgatcgtgcgggcgcccgacggcatcgacggcgagcatttcttc
cagcgccatgcgatgcccgggatgtcgaacctgatcgacctcgcgaaggtctccggtgac
cgcaagccctatgtccagatcgatcgtgtcgaagggctgatcgcggtggcgcagatcggc
ggcctcgaactgcatccgtggaactgcgcgcccggcgcctacgacgtaccagggcggctc
gtgttcgatctcgatcccgccccggatgtcggcttcgacgacgtggtcgccgcggcacgc
gaaatgaaagaccgactggagacgatcggactgtcgacgttctgcaagaccaccggcggt
aagggactgcacgtcgtggtgccgctgcagccgaaggacgacgtcgactggaagcaggcc
aagatattcgcgcagacggtgtgcgcgcagatggccgacgacagtcctgagcgttatctg
ctcaacatgtcgaagcagcagcgcaagggaaagatcttcctcgactacctgcgcaacgac
cggatgtcgacggcggtcgcggcgctgtccccccgggcgcgcgagggagccactgtatcg
atgccggtgacctggagtcaggtcaaagcgggcctcgatccgaagcggttcacgctgggt
acggtgccggccctgcttcgcaagaccaaggcgtgggcggactacgacgaatcagcggcc
ccgctgagggcggcgctcgaggcgctcgcatccagcggggcttga
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