Rhodopseudomonas palustris BisB18: RPC_2610
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Entry
RPC_2610 CDS
T00336
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPC_2610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_2610
Enzymes [BR:
rpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPC_2610
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RPC_2610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABD88160
UniProt:
Q214M6
LinkDB
All DBs
Position
2840122..2843640
Genome browser
AA seq
1172 aa
AA seq
DB search
MKSPTRSPAELLAPGQALTFANVAESAEGLIVSDLARAVAARPKPPAVSLAVICRDGPRM
QQLARSLEFFAPDLAVMQFPAWDCQPYDRVSPHGGVLAQRLTTLARLSRLKGSDKPLIVL
TTVNAIVQRVPAREVIAAQALSVAPGHAVSMESIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDTLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIRKF
RMGYVAEFGAPLRDDQLYEAVSEGRRYPGMEHWLPLFQERMDTLFDYLDRTPIAIEPQGE
DAARERFKQIGDYYLARREARDIPGGGAIYNPLPPDRLYLAEPEWEKCLQGVALARLTPF
AVPADDGHVIDAAARAGRNFAPERADAAVNVFEAVVAHVLALQGQRKKVVVALWSEGSRD
RMASMLRDHKLLNLTSVNSWRTVQATPRNEAMLAVVGMEAGFETDSVAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLAAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELHYAADT
KLFLPVENIELLSRYGSDHAHVELDRLGGSGWQARKAKLKNRIREMAGELIKIAAERHLR
EAPKLVVQPHLYDEFCARFPYDETEDQLGAIQASLHDLESGKPMDRLVCGDVGFGKTEVA
LRATFAVAMEGKQVAVVVPTTLLARQHARNFTERFRGFPVNVGQASRLVPPKELAKVKKG
IAEGAIDIVVGTHALLGKSIKFRDLGLIVVDEEQHFGVSHKERLKQLRAEVHVLTLSATP
IPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVCPR
IEDLAGVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSQHQITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVVEPVADRW
SPQITIGMPVLIPEEFVADLSVRLSLYRRLADLDTDEEIDAFAAELRDRFGLLPDEVRYL
FKVAAIKAYCRRANVEKVDAGPKGVVISFRDNSFAQPDRLVFFIKQHGKAAKVRPDMKVV
FLQDWETPEERLIGTTEILRQLANLAEDRKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaccgacccgctcgcccgcggagctgctcgcccccggacaggctctgaccttc
gccaacgtcgccgagagcgccgaagggctgatcgtgtcggatctggcgcgcgcggtcgcg
gcgcggccgaagccgccggcggtgtcgctcgcggtgatctgccgcgacggcccgcggatg
cagcagctggcgcgctcgctggaattcttcgcgccggatcttgcggtgatgcaattcccg
gcctgggattgtcagccctatgaccgggtatcgccgcacggcggcgtgctggcgcagcgg
ctgaccacgctggcgcggctgtcgcggctgaagggcagcgacaagccgctgatcgtgttg
accacggtcaacgccatcgtgcagcgggtgccggcgcgcgaagtgatcgccgcgcaggcg
ctgtcggtggcgcccggccacgcggtgtcgatggagtcgatcgtcgcctggctcgagcac
aacggctacaaccgttcctcgacggtgcgcgagcccggcgaatacgcggtgcgcggcggc
atcctcgatctgtttccggccggcctcgaccagccggtgcgattcgacttcttcggcgac
acgctggaatcgatccgcaccttcgacgccgagacccagcgcacgctgctcgacatgcgc
gcgctcgatctggtgccgatctcggaattccaactggtcaccgacaccatccgcaaattc
cgcatgggctatgtcgccgaattcggcgcgccgctgcgcgacgatcagctctacgaagcg
gtcagcgaaggccgccgctatcccggcatggagcactggctgcccttgttccaggagcgg
atggacacgttgttcgactatctcgaccgcacgccgatcgcgatcgaaccgcagggcgag
gatgccgcgcgcgaacgcttcaagcagatcggcgactactatctggcgcggcgcgaggcg
cgggacatccccggcggcggcgcgatctacaatccgttgccgcctgaccggctgtatctg
gccgaacccgaatgggagaagtgcctgcaaggcgtggcgctggcgcggctgacgccgttc
gcggtgccggccgacgacggccacgtcatcgatgccgcagcaagggccggccgcaacttc
gcgccggagcgcgccgacgccgcggtcaacgtgttcgaagccgtggtcgcgcatgtgctg
gcgttgcagggccagcgcaagaaggtggtggtagcgctgtggagcgaaggctcgcgcgac
cgcatggcgagcatgctgagggaccacaagctgctcaacctcacctcggtgaattcctgg
cgcacggtgcaggcgacgccgcgcaacgaggcgatgctggcggtggtcggcatggaagcc
ggcttcgagaccgacagcgtcgcggtgatcagcgagcaggacattctcggcgaccgcctg
gtgcggccgcgcaaggccagccgcaagctcgacaatttcatttccgaagtgacgagtctc
gccgccggcgacctcgtggtccatgtcgagcacggcatcggtcgcttcgtcgggctgcag
acgctggaggtcggcggcgcgccgcatgactgcctcgagctgcactacgccgccgatacc
aagctgtttctgccggtcgaaaatatcgaactgctgtcgcgctatggctccgaccacgcc
catgtggaattggatcggctcggcggttcgggttggcaggctcgcaaggccaagctgaaa
aaccgcatccgcgaaatggccggcgagctgatcaagatcgccgccgaacggcatttgcgc
gaagcgccgaaattggtcgtgcagccgcatctgtatgacgagttctgcgcacgcttccct
tacgacgagaccgaggatcagctcggcgcgatccaggcctcgctgcacgatctggaaagt
ggcaagccgatggaccggctggtctgcggcgacgtcggcttcggcaagaccgaggtggcg
ctgcgcgccacctttgcggtggcgatggaaggcaagcaggtcgccgtggtggtgccgacc
acgctgctggcgcggcaacacgcgcgcaatttcaccgagcgtttccgcggctttccggtc
aatgtcgggcaggcctcgcggctggtgccgccgaaagaactcgcaaaggtcaagaagggc
atcgccgaaggcgccatcgacatcgtggtcggcacccacgcgctgctcggcaagtcgatc
aagttcagggacctcgggctgatcgtggtcgacgaggaacagcatttcggcgtcagccac
aaggaacggctgaagcagctgcgcgccgaggtgcacgtgctgacgctgagcgccacgccg
atcccgcgcacgctgcagttggcgctgaccggggtgcgcgatctgtcgatcatcgcctcg
ccgccggtcgatcgtctggcggtgcgcaccttcgtcgcgccgcacgatccgttgatgatc
cgcgaggcgctgctgcgcgagcgctaccgcggcggccaggcgttctatgtctgcccgcgc
atcgaagacctcgccggtgtgaaggatttcctcgacaagcacgtcccggagatgaaggtc
gcggtggcccacggccagatgccgccgacggtgatcgaggacatcatgtcggcgttctac
gacggcaaatacgacatcctgctgtcgaccacgatcgtcgagagtggcctcgacatcccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctggcgcagctctatcag
ctgcgcggccgggtcgggcgttccaagctgcgcgcctatgcgttgttcacgctgccgtcg
cagcatcagatcaccgcgcaggcggagcgccggctcaaagtgctgcaatcgctggagacg
ctcggcgccggcttccagctcgcctcgcacgatctcgacatccgcggcgccggcaatctc
ttgggcgaagaacagtccggccacatcaaggaggtcggcttcgagctctaccaatcgatg
ctggaagaggcgatcgtcaacctcaaggccggcgtggtcgagccggtcgccgaccgctgg
tcgccgcagatcaccatcggcatgccggtgctgatccccgaagagttcgtcgccgacctg
tcggtgcggctgtcgctgtatcgccggctcgccgatctcgacaccgacgaggagatcgac
gccttcgccgccgaactacgcgaccgctttggtctattgcccgacgaggtgcgctatctg
ttcaaggtcgccgcgatcaaggcgtattgccgccgggccaatgtcgagaaggtcgatgcc
ggcccgaagggcgtggtgatctcgttccgcgacaactcgttcgcgcagccggaccggctg
gtgttcttcatcaagcagcacggcaaggccgccaaggtgcgcccggatatgaaggtggtg
ttcctgcaggactgggaaaccccggaggagcggctgatcggcaccaccgaaatcctgcgc
cagctcgccaatttggcggaagaccgcaaggcggcgtag
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