Rhodopseudomonas palustris BisB5: RPD_2644
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Entry
RPD_2644 CDS
T00345
Name
(GenBank) Uracil-DNA glycosylase superfamily
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPD_2644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_2644
Enzymes [BR:
rpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RPD_2644
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RPD_2644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF3054
Motif
Other DBs
NCBI-ProteinID:
ABE39873
UniProt:
Q136W6
LinkDB
All DBs
Position
complement(2961250..2961927)
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AA seq
225 aa
AA seq
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MTATRGPLAAVSRPIAEPDRDCPDCPRLAAFRREQRLREPLWHNAPVPSFGDDDATLLIV
GLAPGLQGANRTGRPFTGDYAGDLLYATLIEYGFAKGNYEARPDDGLRLVRCRISNAVRC
VPPQNKPLPIEINTCRRFLATTIETMPKLRALVMLGRIAHDSTLKAVGLRASQAPFGHGA
VHQAGALRLYDSYHCSRYNTNTGVLTPKMFHAVFARVRADLDQPN
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgacgcgcggtcctctcgccgcggtatctcgtccaatcgccgaacccgatcgt
gattgccccgactgtccgaggctcgcggcattccgccgcgagcagcggctgcgtgagccc
ctctggcacaatgcgccggtgccctcgttcggcgatgacgacgcaacgctactgatcgtc
gggctcgcgccgggcttgcagggcgccaaccgcaccggccggccattcaccggcgattac
gccggcgacctgctctacgcgacgttgatcgaatatggcttcgccaagggtaactacgag
gcccggccggacgacgggctgcggctggtccgctgccggatcagcaatgcggtgcgctgc
gtgccgccgcagaacaagcccctccctatcgagatcaacacctgccggcggtttctcgcg
acgacgatcgagaccatgccgaagctgcgcgcgttggtgatgctcgggcgcatcgcgcac
gattcgacgttgaaagccgtcggccttcgagcatcgcaggcgccgttcgggcacggcgcg
gtccaccaggccggcgcgctgcggctgtacgacagctatcactgctcacgctacaacacg
aacaccggcgtgctcaccccgaagatgttccacgcggtgttcgcccgcgttcgcgccgat
ctggaccaaccgaactag
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