Rhodopseudomonas palustris BisB5: RPD_3098
Help
Entry
RPD_3098 CDS
T00345
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_3098
Enzymes [BR:
rpd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RPD_3098
DNA repair and recombination proteins [BR:
rpd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RPD_3098
Prokaryotic type
RPD_3098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Usp
Motif
Other DBs
NCBI-ProteinID:
ABE40324
UniProt:
Q135B5
LinkDB
All DBs
Position
3441798..3443261
Genome browser
AA seq
487 aa
AA seq
DB search
MPNNTPRPVIVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGAS
RWWLAQSLRALAASLEKRGARLILRRGPAAAIIAELARQVDASAVHWNEIEIAPHRAVAD
DLAEALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLGDPPKLLPAPKT
LSAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTPGEGAAQDNLTAFLDALPGYTEGRDRP
DCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIAGDIDKFLSELGWREFCRHLLHDH
PDLAERNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRMVVAS
FLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQGEKFD
PAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDHRVGRERALAA
YAKTRQH
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaacacgccccgccccgtcatcgtttggtttcgcgacgatctgcggctgtcc
gatcaccctgccctgcatcaagctgccgcatccggcggaccgctgatctgcatctacgtc
ttcgacgaagacagcgcgcagctccgctcgccgcaggccagaccgctcggcggcgcatcg
cgctggtggctggcgcaatcgctgcgcgcgctcgctgccagtttggagaagcgcggcgcg
cggctgatcctgcgccgcggaccggccgccgcgatcatcgccgagctggcgcgccaggtc
gacgccagcgcggtgcactggaacgagatcgagatcgcgccgcatcgcgcggtcgccgac
gacctcgccgaagcgttgagcgtcgccgggatcgatcaccaccgccatcgcggcgatctg
ctcgcttcgccagcggaggtgcgcaccaaagaaggccgcggactgcgcgtgttcacgccg
ttctggcgacgcgtgctcggccttggcgatccgccgaagctgctgccggcgccgaaaacc
ctgagtgccgcgcaaggtccgtccggcgatcagcttgatagctggatgctcgagccgacc
gaaccggactgggccggcggcctgcgcgaaagctggacgcccggcgaaggcgccgcgcaa
gacaacctcaccgcattcctcgacgccctgcccggctacaccgaaggccgcgaccggccc
gactgcgctgcgacgtcgcggctgtcgccgcatctgcggttcggcgagatcagcccgcgt
caggtctggtacgcggcgcggttcgccgcggcggagcggcccgcgatcgccggcgacatc
gacaagttcctgagcgaactcggctggcgcgagttctgccggcatttgctgcacgatcat
cccgatctcgccgagcgcaatctgcaggcctcattcgacgcctttccctggatcaccgac
gccgccgcgctgcacgcctggcagcgcggctgcaccggttatccgatcgtcgatgcggga
atgcgcgagctctggcacaccggcgtgatgcacaatcgcgtccgcatggtggtggcgtcg
ttcctggtgaagcatctgctgatcgactggcgctgcggcgagcaatggttctgggacacg
ctggtcgacgccgatgccggcagcaatccggccaattggcagtgggtcgcgggctccggc
gccgatgccgcgccgtattttcgcgtgttcaatcccatcctgcagggagaaaaattcgac
ccggccggcgactatgtgcgtcgctgggtgcctgaactcgcctcgcttcccgctaaattc
atccaccagccatggactgcgacgccgttcgaactcgcagcggcgggcgtcacactcggc
ggcaattatccggagccgatcatcgatcaccgggtcggacgcgagcgcgcgcttgcggct
tacgccaaaacgcgtcagcattga
DBGET
integrated database retrieval system
