Rhodopseudomonas palustris BisB5: RPD_3490
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Entry
RPD_3490 CDS
T00345
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RPD_3490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_3490
Enzymes [BR:
rpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RPD_3490
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RPD_3490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ABE40713
UniProt:
Q133M6
LinkDB
All DBs
Position
complement(3880200..3882992)
Genome browser
AA seq
930 aa
AA seq
DB search
MVAGKTLTLYRNKRDFEQTAEPRGDGKVAPSKRRRFVIQKHDATRLHYDLRLEYNGVFKS
WAVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERG
FKKGDLKFSLDGEKLQGSWVLVRMRHDRNGGKRTNWLLIKHRDDDAREGKANDILDQDRS
VASGRAMTEIAQGKGRAPKPFMTGKAARVKADAVWNSKEGLAADERAANGAGGAVASKPA
PPNKAKATTAKSKTAKSKTAKVAKPKPGRKAAAKRAAMPDFVPPQLCTSVERPPGGDGWG
HEIKFDGYRMQLRVDAGEATLKTRKGLDWTARFQAIADQAAGLPDALIDTEIVALDQHGH
PDFAALQAALSDGDTDNLICFAFDLLHADGEDLRALPLSDRKRRLQELLTAARGRRKQGL
IRYVEHFDTGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWK
TNAGKFRSLLVGVHHDDHLAYVGIVGTGFGQDVVKRLLPELKAHAAKDNPFAGENAPRKT
ADVHWLAPELVAEIEFAGFTGAGMVRQAAFKGLRADKPAGEVEAEEPAKVDIAGPKPGRR
AKPSSNAKSAKPKTATPNAGRSKTRATHASRAEVMGVVISKPDKELWPASRIGDAVNKRD
LAHYYEAVGDWMIPHLEGRPCSIVRAPDGIGGEHFFQRHAMPGMSNLIALAKVAGDRKPY
VQIDRVEGLIAAAQIGGLELHPWNCAPGRYEVPGRLVFDLDPAPEVGFDAVIVAAREMKD
RLEAIGLPSFCKTTGGKGLHVVTPLVPSDDIDWKQAKIFAQTVCAGMADDSPDRYLLNMS
KQQRKGKIFLDYLRNDRMSTAVAVLSPRAREGATVSMPLTWTQVKAGLDPKRYTVETVPA
LLAKTKAWADYDKAAAPLKAAIKKLAFSRA
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaggcaagactctcacgctgtatcgcaacaagcgcgacttcgagcagaccgcc
gagccgcgcggcgatggcaaggtcgcgccgtcgaagcggcggcgtttcgtgatccagaag
cacgacgccacgcggctgcactacgacctgcggctggaatataacggcgtgttcaagtcc
tgggcggtgacgcgcgggccgtcgctcgatccgcacgacaagcggctcgcggtcgaggtc
gaggaccatccgctcgactacggcgacttcgaaggcacgattcccaagggccaatatggc
ggcggcaccgtgcagctctgggatcgcggctattgggagtgcgacgatccggagcgcggt
ttcaagaagggcgacctcaaattctcgctggacggcgagaagttgcagggaagctgggtg
ctggtgcggatgcgccatgatcgcaacggcggcaagcgaaccaactggttgctgatcaag
catcgcgacgacgacgcccgcgagggaaaggccaacgatattctcgaccaggaccgctcg
gtggcgtccggccgcgcgatgacagagatcgcacaggggaaaggccgcgcgccaaaaccg
ttcatgaccggcaaggcggcgcgcgtgaaggccgacgcggtatggaattcgaaggagggg
ctggccgcagacgagcgtgcggccaatggcgcgggcggggcggtcgcgtcgaagccggcg
ccgccgaacaaggcgaaggcgaccaccgcaaagtccaagacggcaaagtccaagacggcc
aaggtcgcgaagccgaagccggggcgcaaggctgcggcgaagcgcgcggcgatgccggat
ttcgttccgccgcagctctgcacctcggtcgagcggccgcccggcggcgatggctggggt
cacgagatcaaattcgacggctaccggatgcagctacgcgtcgacgccggcgaggcgacg
ctgaagacccgcaagggattggactggaccgccagatttcaggcgatcgccgaccaggcg
gcgggcctgcccgatgcgctgatcgacaccgagatcgtcgcgctcgatcagcacggccac
ccggatttcgcggcgctgcaggcggcgttgtcggacggcgacacggacaatctgatctgc
tttgcgttcgacctgctccatgccgatggcgaggatctgcgtgcgttgccgctgtccgac
cgcaagcggcggctgcaggagttgctcacggccgcgcgcggccggcgcaagcagggcctg
atccgctatgtcgagcatttcgacaccggcggcgacgcgatcctgcaatccgcctgcaag
ctgtcgctcgaaggcatcgtctcgaagaagctcgatgcgccctatcgatccggccgcagc
gacaactggaccaaggcgaagtgccgggccgggcacgaggtggtgatcggcggctggaag
accaatgcgggcaaatttcgttcgctgctggtcggcgtgcatcacgacgatcatcttgct
tatgtcggcatcgtcggcaccggcttcgggcaggatgtggtgaagcgactgctgccggaa
ttgaaagcccacgccgccaaggacaatccatttgccggcgagaacgcgccgcgcaagacc
gccgatgtgcattggctggcgccggagcttgtggccgagatcgagttcgccggcttcacc
ggcgccggcatggtgcggcaggccgcattcaaggggctgcgcgcggacaagccggccggg
gaggtcgaagcggaggagcctgcgaaggtcgatatcgccgggccgaagcccggacgccgc
gccaagccctcatccaacgccaagtcggccaagccaaagaccgcaacgccgaacgcggga
cgcagcaagacccgcgcgacccatgccagtcgcgccgaggtgatgggcgtggtgatctcc
aagccggacaaggagctgtggcccgcgagccggatcggcgatgcggtcaacaagcgcgat
ctcgcgcactactacgaagcggtcggcgattggatgatcccgcatctcgaggggcggccg
tgttcgatcgtccgcgcgcccgacgggatcggcggcgaacacttcttccagcgacacgca
atgccggggatgtcgaacctgatcgcgcttgcgaaagtggcgggcgaccgcaagccttac
gtgcagatcgaccgggtcgaaggattgatcgctgcggcgcagatcggcggccttgaactg
catccgtggaattgtgcgccgggtcggtacgaggtccccgggcggctggtgttcgatctc
gatccggcgcccgaagtcgggttcgacgcggtgatcgtggcggcgcgtgaaatgaaggac
cggctcgaggcgatcggcctgccgagcttctgcaagaccaccggcggcaaggggctgcac
gtggtgacgccgctggtccccagcgacgatatcgactggaagcaggccaaaatcttcgcg
cagacggtgtgcgccgggatggccgacgacagccccgatcgctatctgctcaacatgtcg
aagcagcagaggaagggaaagatcttcctggactatctgcgcaacgaccggatgtcgacc
gcggtcgctgtgctgtcgcctcgcgcacgcgagggcgcgacggtgtcgatgccgttgacg
tggacgcaggtgaaagccgggctcgatcccaagcgatacacggtcgagacagttccagcg
ctgctggcaaagaccaaagcctgggcggactacgacaaagccgcggccccgctgaaagcg
gcgatcaagaagctcgcgttcagcagggcttga
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