Rhizobium phaseoli: AMC79_CH00655
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Entry
AMC79_CH00655 CDS
T04590
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMC79_CH00655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_CH00655
Enzymes [BR:
rpha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMC79_CH00655
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMC79_CH00655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANL96492
LinkDB
All DBs
Position
complement(666566..669076)
Genome browser
AA seq
836 aa
AA seq
DB search
MALETYQAKRNFKLTPEPRGQKGRGTGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLNPEDKRLAVHVEDHPLSYGDFEGIIPQGQYGGGTVIVWDRGTWTPVGDADKAYRKGH
LEFELDGEKLKGRWHLVRMHGRPGEVRENWLLIKGDDAEARHDGDILEERPESAKTGRQL
EEVAENPDATWKSRSGNGKAVAAKTPAQKAKPSGSGERQWPKGARKGAMPDFIEPVLAKL
KPKPPAGDRWIHEIKFDGYRLQVRMEDGKVRMLTRSGLDWTAKFGKDVLDAFAALPVQSA
VIDGEIVVESDSGASDFSALQRDLSEGRNDRFVFYAFDLLHLHGHNLLDARLIDRKHLLE
SLLPADNDKLRYSAHFNERGGLVLDHACRLSLEGVISKLRDSKYTSGRKGDWIKSKCSHR
QEFVIGGYVPSTSMKNAIGSLAMGYYRDGELKHVGRVGTGYTVATAQMLYEKLSRMTQNE
NSFDDKLTAEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKLAKEVTRETEQ
TAARPLPKAAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLPDGI
NGRQRFFQKHAWKGMNPHIEEIIDPKDKQGEKLLRITDFDGVVALVQSAVLEIHPWGTTT
DNWEKPDMITMDLDPGEAVAWEDVIAAAYELKARLEAEDLAAFVKTSGGKGLHVVTPLTP
KASWVEVKAFAKWLADSMSADDPDRYLATATKAKRKGRIFIDYLRNGRGNTAVAAYSTRA
RPGAAVSMPLEWSELTADIGPAYFTVDNTPTRLDALPGDPWDGFFAAAKPLEKKKR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgagacctatcaggcgaagcgcaatttcaaactcacccccgagccgcgcggg
cagaagggccgcggcaccggcaacagtttcgtcatccagaagcatgatgcgacaaggctg
cattatgatttccggctcgagatggatggggtgctgaagagctgggcggtgacgaagggg
ccgagcctcaacccggaggacaagcgcctggctgtgcatgtcgaagaccacccgctctcc
tatggcgatttcgaaggcatcatcccgcaagggcagtatggcggcggcaccgtcatcgtc
tgggaccgcggcacctggacgccggtcggcgacgctgacaaggcctaccggaaaggccat
ctggagttcgagctcgacggcgagaagctgaagggacgctggcacctcgtgcgcatgcac
ggccggcccggcgaggtgcgcgagaactggctgctgatcaagggggatgatgccgaggcg
cgccatgacggcgacattctcgaggaacggccggaatcggccaagacgggccggcagctc
gaagaggtggcggaaaatcccgatgcgacctggaagtccagatccggaaacggcaaggcg
gttgccgccaagacgccggcacaaaaggcgaagccgtcgggatccggcgaacgccaatgg
cctaaaggcgcgcgcaagggcgcaatgcccgacttcatcgaaccggtgcttgccaagctg
aaaccgaagccgccggcgggcgatcgctggatccacgaaatcaagttcgacggctatcgg
ctacaggtcaggatggaggacggcaaggtccgtatgttgacccgcagcggtctcgactgg
acagcaaaattcggcaaggacgtgctcgacgcctttgccgccctgccggtgcagtcggca
gtgatcgatggcgaaattgtcgtcgagagcgatagcggcgcctcggatttctcagcgctc
cagcgcgatctgagcgagggccgcaacgaccgcttcgttttctatgctttcgatctcctt
catctccacggccacaacctgcttgatgcaaggctcatcgatcgcaagcatctgctggaa
agcctgctgcccgccgataatgacaagctgcgctacagcgcgcatttcaacgaacgcggc
ggcctggtgctcgatcatgcctgccggctcagcctcgaaggcgtgatctccaagctgcgc
gacagcaaatacacctcgggacgcaagggcgattggatcaaatcgaagtgctcgcaccgg
caggaattcgtcatcggcggctacgtgccatcgacatcgatgaagaatgcgatcggctcg
ctggcgatgggctattaccgagatggcgagctcaagcatgtcgggcgggtcggcaccggg
tatacggtggccaccgcgcagatgctttatgagaagctgtcgcggatgacgcagaacgag
aactccttcgacgacaagctcaccgccgaggagaggcgtgggctgatctatgtcaagccg
cagctggtcggcgaagtcgagttccgcgcctggtcggccgacggaaatctgcgccatgca
gccttccgcggactgcgcgaggacaagctcgccaaagaggtgacgcgcgagacggaacag
accgcagcccgccccctgccgaaagccgctgtgacgctcactcaccccgaccgtatctac
tggccggacgagggtgttaccaaggaagggctggcgaactattatgcgcaggtctggcgc
ttcatggcgccctatgtcgtcaaccgccctttggcgctcttgcgtctgccggatggaatc
aacggtcgtcagcggttttttcaaaagcacgcctggaaagggatgaaccctcatatcgag
gaaatcatcgatccgaaggacaagcagggagagaagctgctgcggataaccgatttcgac
ggtgtcgtggcgctggtgcaatcggctgtgcttgaaatccacccatggggcacgacgacc
gacaattgggaaaagcccgacatgatcaccatggacctcgatcccggcgaggcggtggcg
tgggaagatgtgatagccgccgcttacgaattgaaggcgcggctggaggccgaagacctc
gccgccttcgtcaagacgtcaggcggcaaggggctgcatgtggtgacgccgctcacaccg
aaagccagctgggtcgaggtgaaggctttcgccaaatggctggccgacagcatgtcggcc
gacgaccccgaccgttatctcgccacggcgactaaggccaagcgcaaagggcggatcttc
atcgattatctgcgcaacggccgcggcaacacggcggttgcagcctattcgacacgcgca
aggccgggtgcggcggtttccatgccgctggaatggagcgaactgaccgccgacatcggg
ccggcctattttaccgtcgacaatacgccgacccggctcgacgccttgcccggagatccc
tgggacggatttttcgcggcggcgaaaccgttggaaaagaagaaaagatag
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