KEGG   Rhizobium phaseoli: AMC79_CH01207Help
Entry
AMC79_CH01207     CDS       T04590                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rpha  Rhizobium phaseoli
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpha00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AMC79_CH01207
   03410 Base excision repair
    AMC79_CH01207
   03420 Nucleotide excision repair
    AMC79_CH01207
   03430 Mismatch repair
    AMC79_CH01207
Enzymes [BR:rpha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMC79_CH01207
    6.5.1.6  DNA ligase (ATP or NAD+)
     AMC79_CH01207
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AMC79_CH01207
DNA replication proteins [BR:rpha03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AMC79_CH01207
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AMC79_CH01207
DNA repair and recombination proteins [BR:rpha03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AMC79_CH01207
   NER (nucleotide excision repair)
    Other NER factors
     AMC79_CH01207
   MMR (mismatch exicision repair)
    Other MMR factors
     AMC79_CH01207
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
1240028..1241653
Genome map
AA seq 541 aa AA seqDB search
MKAFADLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLEVRNVKPAMLREL
VLERMDEVLFRYSYDYVGDLAETISLVWDNERDIDRSALAQPRLGEVVSRMNGLGRTEVR
GYVRDLLDRLDSSGRFAFIKLATGAMRIGVSARLAKQALADLGGRDVTEIETLWHGLQPP
YEALFQWLTGGGDKPALATPAIFHSVMLANAVEEGDLTGLNPGDYAAEWKWDGIRVQLSR
SGDRRKIYSRSGDDISGAFPDILDAINFSGVVDGELLVGGTARSNSPTRTFSDLQQRLNR
KTVTARMLDDYPAFIRAYDLLFDDEEDVRGRTYVDRRERLSEIIDRAPHDRFDLSPLVPF
SSWEELDALRAAPPDPVIEGVMIKRRDSIYQAGRMKGPWFKWKRNPYNVDAVLMYAQRGH
GKRSSYYSDFTFGVWADDEDGEQLVPVGKAYFGFTDAELELLDKFVRNNTTERFGPVRAV
RADRDFGFVVEVAFEGINRSTRHKSGVAMRFPRIARLRPDKPPYEADRLRTLIAMIDAKP
G
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgccgacctcctcgaccgcctggtgctgacccccagccgcaacggcaag
ctcaagctgctgaccgactatttccgcgacacgcccgatcccgaccgtggttacggcctt
gccgccatcgccggcacgctggaggtgcgcaatgtcaagccggccatgctgcgcgagctg
gtgctcgagcgcatggacgaggtactgttccgctattcctacgattatgtcggcgatctc
gccgaaaccatctcgctcgtctgggacaatgagcgggatatagaccgttccgcccttgcc
cagccgcgcctcggcgaggtcgtcagccgcatgaacgggctcggccgcaccgaagtgcgc
ggctatgtccgcgacctgctcgaccggctggattcctccggccgcttcgccttcatcaag
ctggcgaccggggccatgcgcatcggcgtctccgcccgccttgccaagcaggcgctcgcc
gatctcggcggcagggacgtcaccgagatcgaaacgctttggcacggcctgcagccaccg
tatgaggcattgttccagtggttgacaggcggcggcgacaagccggcgctggcgacgccg
gcgatcttccattccgtcatgctcgccaatgcggtggaggagggggatcttaccggtctc
aacccgggcgactacgccgccgagtggaaatgggatggcatccgcgtccagctttcccgc
tccggcgaccggcgcaagatctattcccgctccggcgacgatatctccggcgcctttccc
gatattctcgacgccatcaatttttccggtgtcgtcgacggcgagttgctagtcggcggc
accgcccgctccaacagcccgacccgcaccttctccgacctgcagcagcgcctgaaccgc
aagacggtgaccgcacggatgcttgacgattaccccgccttcatccgcgcctatgacctg
cttttcgacgatgaagaggatgtgcgcggccgcacctatgtcgatcgccgcgagcgtctt
tccgagatcatcgaccgcgctccccacgatcgcttcgatctgtcgccgctcgtgccgttc
tcatcctgggaggagctcgatgctttgcgcgccgctccgcccgatccggtcatcgaaggg
gtgatgatcaagcggcgcgacagcatctaccaggccggccgcatgaaggggccctggttc
aagtggaagcgcaatccctacaacgtcgatgctgtgctgatgtatgcccagcgcggtcac
ggcaagcgctccagctactattccgatttcaccttcggcgtctgggccgacgacgaggac
ggcgaacagctggtgcctgttggcaaggcctatttcggtttcaccgatgccgagctcgag
ctgctcgacaagttcgtgcgcaacaatacgacagagcggttcggcccggttcgggccgtg
cgcgccgacagggatttcggcttcgtcgtcgaggtcgccttcgagggcatcaaccgctcg
acacggcacaaatccggggtcgccatgcgctttccccgcatcgcccgccttcgccccgat
aaaccgccctacgaggccgaccggctgcgcacgctgatcgccatgatcgacgcgaagcca
ggctga

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