Rhizobium phaseoli: AMC79_PB00166
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Entry
AMC79_PB00166 CDS
T04590
Name
(GenBank) DNA polymerase LigD domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMC79_PB00166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_PB00166
Enzymes [BR:
rpha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMC79_PB00166
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMC79_PB00166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANM00581
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All DBs
Position
pRphaN261b:190583..191461
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AA seq
292 aa
AA seq
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MSPANPPASDVSLTHPDRLYWPDVGVTKQNLADYYAAVWRFMAPYLVNRPLALLRLPDGI
KSHQRFFQKHGWKGMNSHIEEIADPEDPEGEKLLRIADFDGLVALVQSAALEIHPWGTTT
DHWERPDMIIMDLDPGEDVVWSAVITAVLDVKARLEARGLAAFVKTSGGKGLHVVAPLAP
KAGWAEVKDFAHSLAENMSADAPEKYLATATKAKRGGHIYIDYLRNGRGSTAVAPYSTRA
RPGAPVSMPLDWSDLKGLGGPAAFTLANVPQRLEARPRDPWADFFDAAVPLQ
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgagccccgcaaacccaccggcatcggacgtatccctgacccatcccgaccggctttac
tggccggacgtgggcgtgaccaagcagaatctggcggattattacgctgccgtctggcgt
ttcatggcgccctatctcgtcaatcggccactggcgctcttgcgcctgccggacggaata
aaaagccaccagcggtttttccagaaacatggctggaaaggcatgaattcccatatcgag
gagatcgccgaccctgaggacccggagggcgagaaactgttgcgcattgccgatttcgac
gggcttgtcgcgctggtgcaatcggccgcacttgaaattcatccctggggcacgacgacc
gatcattgggaaagacccgatatgatcatcatggatctcgaccccggcgaggacgtcgtc
tggagcgcggtgataacggcggtgcttgacgtcaaggcgcggctggaagcccgcggcctt
gccgccttcgtcaagacctcaggcggcaaggggctgcatgtggtggcgccgcttgcgccg
aaggccggttgggccgaggtcaaggatttcgctcattcgcttgccgaaaacatgtcggcg
gatgcgccagagaaatatctggcaacggcgacgaaggcaaaacgcggcgggcatatctat
atcgattatctccgcaacggtcgcggcagcacggcggtcgcaccctattcgaccagggcg
cggccgggtgctccggtgtcgatgccgctcgattggtccgatctgaaggggctcggtggt
ccggccgccttcaccctcgccaatgtgccgcagcggctggaggcccggcctcgcgatccc
tgggccgatttcttcgatgcggccgtgccgctgcaatga
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