Ruditapes philippinarum (Manila clam): 132737954
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Entry
132737954 CDS
T09557
Name
(RefSeq) exosome complex component RRP46-like
KO
K12590
exosome complex component RRP46
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132737954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132737954
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132737954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Fascin
Motif
Other DBs
NCBI-GeneID:
132737954
NCBI-ProteinID:
XP_060581322
LinkDB
All DBs
Position
Unknown
AA seq
220 aa
AA seq
DB search
MKSIKKEEIVSLRHLTCEMGHLSRPDGSATVYQGDTCVMVSVYGPGEVRMNKEQLDRATV
DVVYKPKSGLPACVDKAFEKVVCNTCETVLLASLYPRSSINITVQEVQDSGSFLAACINS
CCLALLDASVSMKCTMAAVSCCIDTDNEIILDPTKSQEEVAKSTFTFVFDSKDRNIISIL
AEGKYTQDQFQSCLVVCKEASESVFNFYRDSIKRKLSKTV
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgaagtccataaaaaaggaagagatagtatcactgcgccatcttacatgtgaaatgggt
catttgtctcgtcctgatggttcagccactgtctaccagggtgatacatgtgtaatggtc
tctgtatacggaccaggtgaagttagaatgaataaagaacaattggatcgtgcaactgta
gatgttgtgtacaaacctaaatctggactgccagcatgtgttgacaaagcatttgaaaaa
gttgtatgtaatacatgtgaaactgtgttacttgcaagtttatatcccaggtcctcaatt
aatataactgtgcaagaagttcaggactctggctcatttttggcagcttgcattaacagc
tgttgcttggcattgttagatgccagtgtaagtatgaagtgtactatggcagctgtcagc
tgttgtattgatacagacaatgaaataattttagatccaaccaaatctcaagaggaagtg
gcaaagtcaactttcacttttgtgtttgacagcaaggataggaatattataagcatatta
gcagaaggaaaatacacacaagaccaatttcagagttgcttagttgtttgcaaagaagca
agtgaatcagtgttcaatttctatcgagacagcatcaaaagaaaattgtctaaaactgta
tag
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