Ruditapes philippinarum (Manila clam): 132748703
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Entry
132748703 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 1-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03082
ATP-dependent chromatin remodeling
rphi03083
Polycomb repressive complex
rphi04330
Notch signaling pathway
rphi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132748703
03083 Polycomb repressive complex
132748703
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
132748703
04350 TGF-beta signaling pathway
132748703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rphi03036
]
132748703
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
132748703
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
132748703
HDAC complexes
Sin3A-HDAC complex
132748703
BRAF-HDAC complex
132748703
REST complex
132748703
SHIP complex
132748703
MiDAC complex
132748703
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
132748703
Heterochromatin formation proteins
Other heterochromatin formation proteins
132748703
Chromatin remodeling factors
NuRD complex
132748703
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
132748703
NCBI-ProteinID:
XP_060594301
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MASQPHSKKRICYYYDGDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAT
QEEMTKFHSDDYIKFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGMYEFCQLSTGGSVAG
AVKLNKQAADIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDEAYETI
FKPVMTKVMEMYQPSVIVLQCGADSLSGDRLGCFNLTLKGHGKAVEFMKKWNLPLMLLGG
GFFLSSVFRETKLPYNDYFEYYGPDFKLNISPSNMANQNTGEYLEKIKTRLFENLRMLPH
APGVQMQAIPEDALNXESVIMRPKENPNKQKSLYVPVINVSTVMKSFSDSEDEMSGPNVR
LDGRRDSNITQT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacaaccgcacagcaaaaagcgaatttgctattactatgatggtgacattggc
aactattattatggacagggacatcccatgaaaccacaccgtatacgcatgacacataat
cttattcttaattatggtctctacagaaagatggaaatatatcggccacacaaggccacc
caggaggaaatgaccaagttccatagtgatgattatatcaagtttttacgaagtatacga
ccagataatatgtccgaatataataaacagatgcagagattcaatgtcggtgaagattgc
ccagtatttgacggcatgtatgaattctgtcagctgtcaacaggaggatctgttgctggg
gcagtaaagttgaacaaacaggcagcagatattgctataaactgggccggtggtcttcat
catgctaagaaatcagaggcatcaggattctgttatgttaatgatattgtacttgccatt
ctggagttactcaaataccatcagagagtgttatatatagatattgacattcaccatgga
gacggtgtagaagaagcattttatacaacagatcgtgtgatgactgtctcattccataaa
tatggagaatattttcctggtacaggagatcttagggatataggtgcaggaaaagggaaa
tattatgctgtcaactttcctctaagagatggtattgatgatgaagcatatgaaactatc
tttaaaccagtgatgaccaaggttatggagatgtaccagcctagtgttatagtgctacaa
tgtggggctgactcactatcaggagacagactgggttgttttaatcttactcttaaaggt
catggtaaagctgtagagttcatgaagaaatggaatcttccattgatgttactgggtgga
ggatttttcctttcttctgtatttagggaaacaaaattaccatacaatgattactttgag
tattatggaccagacttcaagttaaacattagtccctcaaatatggccaaccagaataca
ggagaatatctggaaaaaatcaagacaaggttgtttgagaacttgagaatgttgcctcat
gcaccaggtgttcaaatgcaagctataccagaagatgccctcaatnatgagagtgtgata
atgagacctaaagaaaacccgaacaagcagaaatctctatacgtgccagtgataaacgta
tccactgtgatgaagagtttttcagactcggaagacgagatgtcaggaccaaacgtgagg
ctggacggtcgacgagacagcaacatcacacaaacctaa
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