KEGG   Ruditapes philippinarum (Manila clam): 132748703
Entry
132748703         CDS       T09557                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 1-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03082  ATP-dependent chromatin remodeling
rphi03083  Polycomb repressive complex
rphi04330  Notch signaling pathway
rphi04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    132748703
   03083 Polycomb repressive complex
    132748703
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    132748703
   04350 TGF-beta signaling pathway
    132748703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rphi03036]
    132748703
Enzymes [BR:rphi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     132748703
Chromosome and associated proteins [BR:rphi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     132748703
   HDAC complexes
    Sin3A-HDAC complex
     132748703
    BRAF-HDAC complex
     132748703
    REST complex
     132748703
    SHIP complex
     132748703
    MiDAC complex
     132748703
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     132748703
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    132748703
  Chromatin remodeling factors
   NuRD complex
    132748703
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 132748703
NCBI-ProteinID: XP_060594301
LinkDB
Position
Unknown
AA seq 432 aa
MASQPHSKKRICYYYDGDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAT
QEEMTKFHSDDYIKFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGMYEFCQLSTGGSVAG
AVKLNKQAADIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDEAYETI
FKPVMTKVMEMYQPSVIVLQCGADSLSGDRLGCFNLTLKGHGKAVEFMKKWNLPLMLLGG
GFFLSSVFRETKLPYNDYFEYYGPDFKLNISPSNMANQNTGEYLEKIKTRLFENLRMLPH
APGVQMQAIPEDALNXESVIMRPKENPNKQKSLYVPVINVSTVMKSFSDSEDEMSGPNVR
LDGRRDSNITQT
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcatcacaaccgcacagcaaaaagcgaatttgctattactatgatggtgacattggc
aactattattatggacagggacatcccatgaaaccacaccgtatacgcatgacacataat
cttattcttaattatggtctctacagaaagatggaaatatatcggccacacaaggccacc
caggaggaaatgaccaagttccatagtgatgattatatcaagtttttacgaagtatacga
ccagataatatgtccgaatataataaacagatgcagagattcaatgtcggtgaagattgc
ccagtatttgacggcatgtatgaattctgtcagctgtcaacaggaggatctgttgctggg
gcagtaaagttgaacaaacaggcagcagatattgctataaactgggccggtggtcttcat
catgctaagaaatcagaggcatcaggattctgttatgttaatgatattgtacttgccatt
ctggagttactcaaataccatcagagagtgttatatatagatattgacattcaccatgga
gacggtgtagaagaagcattttatacaacagatcgtgtgatgactgtctcattccataaa
tatggagaatattttcctggtacaggagatcttagggatataggtgcaggaaaagggaaa
tattatgctgtcaactttcctctaagagatggtattgatgatgaagcatatgaaactatc
tttaaaccagtgatgaccaaggttatggagatgtaccagcctagtgttatagtgctacaa
tgtggggctgactcactatcaggagacagactgggttgttttaatcttactcttaaaggt
catggtaaagctgtagagttcatgaagaaatggaatcttccattgatgttactgggtgga
ggatttttcctttcttctgtatttagggaaacaaaattaccatacaatgattactttgag
tattatggaccagacttcaagttaaacattagtccctcaaatatggccaaccagaataca
ggagaatatctggaaaaaatcaagacaaggttgtttgagaacttgagaatgttgcctcat
gcaccaggtgttcaaatgcaagctataccagaagatgccctcaatnatgagagtgtgata
atgagacctaaagaaaacccgaacaagcagaaatctctatacgtgccagtgataaacgta
tccactgtgatgaagagtttttcagactcggaagacgagatgtcaggaccaaacgtgagg
ctggacggtcgacgagacagcaacatcacacaaacctaa

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