Ralstonia pickettii 12J: Rpic_0501
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Entry
Rpic_0501 CDS
T00762
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rpic_0501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpi03400
]
Rpic_0501
Enzymes [BR:
rpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rpic_0501
DNA repair and recombination proteins [BR:
rpi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rpic_0501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACD25656
UniProt:
B2UGG9
LinkDB
All DBs
Position
1:complement(534186..536777)
Genome browser
AA seq
863 aa
AA seq
DB search
MPRHLADYRSKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQWLLIKERDDQVRASSDYDVTQ
ALPASVITGENVGAKPKAKADGRKTQRADPAQVQPPAGAVPGTLPKTLEPQLATLVDAPP
RQGEWNYEVKFDGYRILARIDGNTVRLFSRNGRDWTAKLPRQARTLQALGLREAWLDGEV
VVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLERILDAA
PGNLDREAVLFSGTFHAAPEDLLSSACSMSLEGVIGKRADAPYRAGRSPAWIKLKCGQRQ
EFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGLTVDT
PPFANPPTGSDARDVQWVKPERVAEIAFAEWTREGIVRQAVFQGLRDDKLARNIVREQAK
PPSAAARKETRAVNAAERKVRPGAERIADVDVTHPDRVIEKASGTTKADLARYYAGVAEW
MLPHLRNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINSAEAL
VGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLMLAMLDELGLKA
FLKTSGGHGMHVVVLLTRREAAGWDTLKTFAQAVVQHMAATFPDRFVAKMGPQNRVGKIF
IDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQSSAQWTLRTLPERLAKLKGDP
WAAYAGTRQSVTADMRKRVGADD
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
gtgccacgccatctcgccgactaccgcagcaagcgcgatttcacgcagacccaggaaccc
gccggcgcgcgccgcaaagccgacgagcagcgtgaccatggcgccctgcacttcgtgatc
cagaagcacgacgcaacgcgactgcactacgacttccggctggaactcgacggcacgctc
aagagctgggccgtccccaagggcccgagcctggaccccgccgacaagcgcctcgcggta
catgttgaagaccacccgctggactacgcggatttcgaaggccatatccccgaaggacaa
tacggcggcggcgacgtgatcgtgtgggaccgcgggacatggcgcccgcatggcgatccg
cgcaaggcctatcgcgacggcaagctcaaattcgacctccatggcgagaagctgcatggt
gcatgggcgctggtacgcacgcatttgcacggcacgggcagacatccgaaagaacagtgg
ctgctgatcaaggaacgcgacgaccaggtgcgcgcatcgagcgactacgacgtgacacag
gcgctgcccgccagcgtgatcaccggagagaacgtcggcgcaaaaccgaaggctaaggcc
gatggccgcaagacccagcgtgccgatccggcacaagtccagccgcccgccggtgccgtg
cccggcacgttgccgaaaacgctggagccgcagcttgccacgctcgtcgatgcgccgcca
aggcaaggcgagtggaattacgaagtgaagttcgacggctaccgcatcctggcgcgcatc
gacggcaacaccgtgcgcctgttcagccgcaacggccgcgactggacggccaagctgccg
cgtcaggcgcgcacgctgcaggcgctgggcctgcgcgaggcgtggctcgacggcgaagtc
gtggtgatgggcgagcgcggcgtgcccgacttccaggcgctgcagaacgccttcgaaacc
gcgcatgccgaacacattgcctactacctgttcgacatcccgttctgcaacggcatggac
ttgcgcggtgtgccgttgcgcgagcggcgggcgctgcttgagcgcattctcgatgccgcc
ccgggcaacctggaccgcgaagcggtgctcttctcagggacatttcacgcggcacccgaa
gacttgctgtcttccgcgtgcagcatgtcgctcgaaggggtgatcggcaagcgcgccgat
gcgccgtaccgggccggccgcagccctgcctggatcaagctcaaatgcgggcagcggcag
gaattcgtgatcggcgggtacagtgcgcccaagggtagccgcagcggcttcggtgccctg
ctgctcggcgtgtatgacgacgcgggcaagctgcgctatgcgggccgtgtcggcacgggc
ttcaacgagacgagtctgcacgctttgcaccacgagctgacgggtctgaccgtcgacacg
ccgcccttcgccaacccgcccaccggcagcgatgcgcgcgacgtgcaatgggtgaagccc
gaacgcgtggcggaaatcgcctttgccgaatggacgcgcgaaggcatcgtgcggcaagcc
gtgttccaaggtttgcgtgacgacaaactcgcgcgcaacatcgtgcgtgaacaagccaag
ccgcccagcgctgccgcacgcaaggagacccgcgccgtgaatgctgccgaacgcaaggtg
cgccccggtgccgaacgcatcgccgatgtggacgtcacgcatccagatcgcgtgatcgag
aaagccagtggcaccaccaaggcggacctggcgcgctattacgccggtgtggccgaatgg
atgctgccgcatcttcgcaaccgcccgacatcgctcgtacgcgcgcccgacggcatcgac
ggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggcatcacgcagctg
gacccatcgctcgacccggggcatccgtcgctgcttgcgatcaactcggccgaggccctg
gtcggcgcggtgcagatgggcacggtggagttccacacgtggaatgcgctggccgaccgc
atcgaacaacccgaccgcatcgtcttcgatatcgacccggacccggcgctgcctttcgcg
cgcgtgatcgaggccacgcagctcatgctggccatgcttgatgaactcggcctgaaggcc
ttcctgaaaaccagcggtgggcatggcatgcacgtggtggtgctgctcacgcgccgcgaa
gccgctggctgggacacgctcaaaacgttcgcgcaagccgtggtgcaacacatggccgcg
accttccctgaccgctttgtcgccaagatggggccgcagaaccgcgtgggaaaaatcttc
atcgactatctgcgcaacaaccgcggtgcgagcacggtggccgcctattcggtgcgcgcg
cggacggggttgccagtgtccgtgccgatccgccatgacgagctggaagggctgcagtcg
tctgcccagtggacgctgcgcacgctgcccgaacggctcgccaagctcaagggcgatcct
tgggccgcctatgccggtacgcgtcaatcggtcacggccgacatgcgcaaacgcgttggc
gccgatgactga
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