Rhodopseudomonas palustris TIE-1: Rpal_4171
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Entry
Rpal_4171 CDS
T00722
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rpal_4171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_4171
Enzymes [BR:
rpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rpal_4171
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rpal_4171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ACF02667
UniProt:
B3QGJ0
LinkDB
All DBs
Position
complement(4474379..4477123)
Genome browser
AA seq
914 aa
AA seq
DB search
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPERGF
KTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGGANTVLDDDRSV
ASGRAMETIAEGKGKAPKPFMLRKAAAKVTADAVWDSNTGLAADKRAETGAAKKVAKSKP
KTSAKAKAAKSAKPASRSKLAAQGQRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFSAIADEAASLPDSIIDTEVVALDSHGQPDFAALQAA
LSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEHFDT
GGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDVLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTRELHWATPD
LVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVEVAEPALKRRTAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGDWLIPHI
KGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGDRKPYVQIDRVEGLIAAAQIG
GVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKLRLETLGLATFCKTTGG
KGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKQKRIGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIKSVPALMKRSKAWADYDDAAA
PLKAAIKTLTSGKT
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtggccagcaacaagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcgtggcgatgccaaggtggcgccgtcgaagcagcggcggttcgtgattcagaagcac
gacgccacccggctgcactacgacctgcgcctggaatatggcggtgtctttaagtcctgg
gcggtgaccaaaggaccgtcgctcgatcccaacgacaagcgccttgctgtcgaggtcgag
gatcatccgctcgactacggtgacttcgaaggcacgattcccaagggtcagtacggcggc
ggcacggtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcgcggcttc
aagaccggcgacctgaagttcaccctgcatggcgagaagctgcatggcagttgggtgctg
gtgcggatgcggcacgaccgcagcggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgacgacgcccgcgagggcggcgccaacaccgtgctcgacgacgaccgctcggtc
gcctcggggcgcgccatggaaacgatcgcggaaggcaagggcaaggcaccgaagccattc
atgctgcgcaaggcggccgcgaaggtcacggcggacgcggtgtgggattccaacaccggg
cttgcggccgataagcgggcggagactggcgctgcgaagaaagtcgccaagtccaagccg
aagacctccgcgaaagcgaaagctgccaagtccgcgaagccagcgtcgcggagtaagcta
gccgcgcaaggccagcgcgcagccatgccggacttcgtgccgccgcagctctgcacctcg
gtggagcggccgcccggcggcgagggctggggtcacgaaatcaagttcgatggctaccgg
atgcaactccgcgtcgagcatggcgaagccaggctgctgacacgcaagggtctggactgg
accgccaagtttagtgcgatcgccgacgaagcggcatcgctgccggactcgattatcgac
accgaggtggtggcgctggattcgcacgggcagccggatttcgcggcattgcaggcggcg
ctgtccgatggtcacaccgagaacttgatctgcttcgcgttcgatctgctctacgtcgat
ggtgaggatctgcgcggcctgccgttggcggagcgcaaggcgcggcttgcggccctgctg
aaagcagcgcgcggccggcgcaaggaggggctgatccgttacgtcgagcatttcgacacg
ggcggagacgcgatcctgcaatcggcctgcaagctgtcgcttgaggggatcgtatcgaaa
aagctcgacgccgcgtatcgctccggtcgcagcgatggctggaccaaggcgaagtgccgc
gccggccatgaggtggtgatcggtggctggaagaccacgaacggcaaattccgctcattg
cttgtcggcgtccatcgcggcgatgtccttgcctatgtgggcatcgtcggcaccggcttt
ggccaggacgtcgtcaaacgcatcctgcccgagctgaaagcgcacaaagcggataccagt
ccgttcagcggcgccaatgcgccgaagaagacccgtgagttgcattgggctacgcccgat
ctcgtcgctgagatcgaatttgccggcttcaccggcgccggcatggtgcggcaggcgtcg
ttcaagggcctacgtgccgacaagccggcggaggaggtggaggccgaggagccgcagcgg
gtcgaggttgccgagccggcactgaagcgtcgcactgccaaggcttcgaagtcgggcaag
ccggccgcaaagcgcgcggcgccgcgccgggccgatgccgcccgctccgaggtgatgggc
gtggcgatctccaaacccgacaaggagctgtggccggcgagcgagatcggcgccgcgatc
accaaacgcgatcttgccgattacttcgccgaggtcggcgactggctgatcccgcacatc
aagggacggccgtgttcgatcgtgcgggcaccggacggaatcgacggcgagcacttcttc
cagcggcacgcgatgccgggaatgtcgaacctgatcgggctggcaaaggtctcaggcgat
cgtaagccgtatgtgcagatcgatcgtgtggaaggactgatcgcggcggcgcagatcggc
ggggttgagctgcatccgtggaactgtgcgccgaaccgctacgacgtgccgggacgtctg
gtgttcgatctcgatccggcgcctgaggtcgggttcgacgaggtgatcacggccgccaag
gagatgaagctgcggctggaaacgctcgggcttgccaccttctgcaagaccactggcggc
aaggggctgcacgtcgtggtgccgctcaaacccgacgacggcatcgactggaaggcggcg
aagaccttcgcccagacggtgtgtgcgcagatggccgaggatagccccgagcaatatctg
ctcaacatgtcgaagcagaagaggatcggaaagatcttcctcgattacttgcgcaacgac
cggatgtcgaccgcggtcgccgtgctgtcgccacgggcgcgcaccggtgccacggtgtcg
atgccgctgacgtggtcgcaggtgaaggccgggctcgatcccaagcgctacacgatcaag
tcggtgcccgcgctgatgaagcgctcgaaggcgtgggcggattacgacgacgccgcagct
ccgctgaaggccgcgatcaagacgctgacctcgggcaagacatag
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