Rhodococcus pyridinivorans SB3094: Y013_03425
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Entry
Y013_03425 CDS
T02974
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Y013_03425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_03425
Enzymes [BR:
rpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Y013_03425
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Y013_03425
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AHD19810
UniProt:
V9XCW0
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All DBs
Position
complement(717829..718797)
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AA seq
322 aa
AA seq
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MPSTTTELSPMLATLGPPPTGNWAFEMKWDGQRTLATVTDGQCRLTSRTGNDITRSFPEL
PHLLTTATGGRDCIVDGEIVTLDSEGRPSFARLQRRMHVHRPTEELRAELPVLIYLFDVL
ALDGQSTTELSYRQRRAVLDDLIVPGPRVQLSPYWTDVDAPTMLTVAREHGLEGIVAKDP
DAPYLPGTRSDGWIKTPLRRNTEVVVVGWLPGSGKAAGGIGSLLLGAHDDEERLVFIGRV
GTGFTAATRRELRSQLRPLERPTTPLAVAPPARETHGAHWVEPILVGEVEYREYAGGSLR
HPSWRGLRTDKTVPEVDLPGRH
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgccctccacgacgacggaactgtccccgatgctggcgaccctcggtccgccgccgaca
gggaactgggcgttcgagatgaaatgggacggccagcgcaccctcgccacggtgaccgac
ggacagtgccggctgaccagccgcaccgggaacgacatcacccggagcttccccgaactc
ccccacctgctcaccaccgcgacgggcggccgggactgcatcgtcgacggcgagatcgtc
accctcgattccgagggtcggccgtccttcgcccggttgcagcgccgcatgcacgtccac
cgtcccaccgaggagctacgcgccgagctaccggtgctgatctacctgttcgacgtcctc
gctctcgacggacagtccacgacggagttgtcctatcggcagcgccgggccgtcctcgac
gatctgatcgtccccggacctcgggttcagctgtcgccctactggaccgatgtcgacgca
ccgaccatgctcacggtcgcgcgcgaacacggcctcgaagggatcgtcgccaaggacccg
gacgcaccgtatctacccgggacccgcagcgacggctggatcaagacgccgctgcgtcgg
aacaccgaggtggtcgtcgtcgggtggctccccggatccggcaaggctgccggcggcatc
ggttcactgctgctcggcgcgcacgacgacgaggaacggttggtgttcatcggccgggtc
gggacgggattcaccgccgcgacccgacgtgagttgcgatcgcagctgcgtcccttggaa
cgaccgacgaccccactggcggttgcgccgccggcacgggagacccacggcgcccactgg
gtggagcccatcctcgtcggagaggtcgagtaccgggagtacgcgggtggaagcctccgg
catccgagctggcgaggactacgcaccgacaagacggtgccggaggtcgatctcccgggc
cgacactga
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