Rhodococcus pyridinivorans SB3094: Y013_06625
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Entry
Y013_06625 CDS
T02974
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy00470
D-Amino acid metabolism
rpy00550
Peptidoglycan biosynthesis
rpy01100
Metabolic pathways
rpy01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Y013_06625
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Y013_06625
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Y013_06625
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rpy01011
]
Y013_06625
Enzymes [BR:
rpy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Y013_06625
Peptidoglycan biosynthesis and degradation proteins [BR:
rpy01011
]
Precursor biosynthesis
Amino acid ligase
Y013_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
ATP-grasp_3
CPSase_L_D2
ATP-grasp_4
ATPgrasp_ST
RimK
Motif
Other DBs
NCBI-ProteinID:
AHD20363
UniProt:
V9XDC4
LinkDB
All DBs
Position
complement(1382869..1383975)
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AA seq
368 aa
AA seq
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MSMPRTRVAVVFGGRSNEHSVSCISAGSILRNLDPEKYEVVPIGITPEGAWVLGDADPAG
LAAAGRELPVVAGDGSDLVLTADPTRGGDIVALDEGSYGRVLASVDVVFPVLHGAYGEDG
TIQGLLELADIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQIVLRPGTATLTEEQKT
RLGLPVFVKPARGGSSIGISRVADWAAFDDAVAKARQHDPKVIVESAIIGREVECGVLEF
PDGDVRASVVAEIRMPDTSDDHEAFYDFDTKYLDDVCEFDVPAKLDEETSDRIRELAVRA
FRALDCHGLSRVDFFVTEDGPVINEINTMPGFTSISMYPRMWEATGVEYAELLSILVETA
LARGTGLR
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatgccccgaacccgggtggccgtcgtcttcggtggtcgcagcaacgaacattcc
gtctcctgcatctcggcagggagcatcctgcgcaacctggatccggagaagtacgaggtc
gtgcccatcggcatcactcccgagggcgcatgggtcctcggcgacgcggacccggccggc
ctcgccgcggccggtcgcgaactgcccgtcgtcgcaggcgacggctccgatctcgtcctc
accgcggatccgacccgcggtggcgacatcgtcgccctcgacgagggctcctacggccgg
gtgctcgcctcggtcgacgtggtgttccccgtcctgcacggcgcctacggcgaggacggc
accatccagggtctgctcgaactcgcggacatcccgtacgtcggtcccggggttcttgcc
agcgccgccgggatggacaaggagttcaccaagaaactgctcgcggccgaaggcctgccc
gtcggcttccagatcgtcctgcgtcccggcaccgcgaccctcaccgaggagcagaagacc
cgcctcggcctgcccgtcttcgtcaagcccgcccgcggcggatcgtccatcggcatcagt
cgcgtggccgactgggccgccttcgacgacgccgtcgcgaaggcccggcagcacgacccc
aaggtcatcgtcgagtccgcgatcatcggccgcgaggtggagtgcggcgtgctcgagttc
ccggacggcgacgtccgcgcgagtgtcgtcgccgagatccgcatgcccgacacctccgac
gaccacgaggcgttctacgacttcgacacgaagtacctcgacgacgtctgcgagttcgac
gtcccggccaagctcgacgaggagacctccgaccggatccgcgaactcgcggtccgggcg
ttccgcgccctcgactgccacggcctgtcccgcgtcgacttcttcgtcaccgaggacgga
ccggtgatcaacgagatcaacacgatgcccggattcacctccatctcgatgtatccgagg
atgtgggaggccaccggagtggagtacgccgagctgctgtcgatcctggtggagacggcg
ctggcgcggggcaccggcctgcgctga
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