Rhinopithecus roxellana (golden snub-nosed monkey): 104673372
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Entry
104673372 CDS
T03989
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X2
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro03030
DNA replication
rro03410
Base excision repair
rro03420
Nucleotide excision repair
rro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104673372 (LIG1)
03410 Base excision repair
104673372 (LIG1)
03420 Nucleotide excision repair
104673372 (LIG1)
03430 Mismatch repair
104673372 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rro03032
]
104673372 (LIG1)
03400 DNA repair and recombination proteins [BR:
rro03400
]
104673372 (LIG1)
Enzymes [BR:
rro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104673372 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
104673372 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
104673372 (LIG1)
DNA replication proteins [BR:
rro03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
104673372 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
104673372 (LIG1)
DNA repair and recombination proteins [BR:
rro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
104673372 (LIG1)
NER (nucleotide excision repair)
Other NER factors
104673372 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
104673372 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DUF1685
DDR
Motif
Other DBs
NCBI-GeneID:
104673372
NCBI-ProteinID:
XP_010375686
UniProt:
A0A2K6QQN7
LinkDB
All DBs
Position
12:complement(108017599..108072162)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSDSDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPRPAKSPENSASLSDTSPMDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSVDEDRESKRKKEEEEVETPEESLAEAEVATEKEGEDRDQ
PTTPPKPLKTSEAGTPTESVSEPEVATRQELQEEEEQTKPPRSTPKTLSSFFTPRKPAIK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKLGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGQSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTPDHWLDPNA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccccctccaaaggcggcactgaaa
gagtggaatggagtggtgtctgatagtgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagcgaaggggaagaggaggatgaggcccttagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccccgccccgtcctgccaaatctcctgaa
aacagcgcttccctctctgacacctctcccatggacagctccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgtggacgaggacagagaatccaaaaggaagaaggaggaggaagaggtggagacccca
gaagaaagcctcgcagaggctgaagtggcaacagagaaggaaggagaagacagggaccag
cctaccacacctcccaagcccctaaagacctccgaagcagggactccaacggaaagcgtt
tcggagcccgaggtggccacaaggcaggaactgcaggaggaggaagagcagaccaagcct
ccccgcagcactcccaagacactcagcagcttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaggaggaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggacccatctggttacaatcctgccaagaacaactaccatcccgtggaagacgcctgc
tggaaactgggccagaaggtcccttacctggctgtggcccggacgtttgagaagatcgag
gaggtgtctgcccggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccctgtcctatacctcagcctcaaccaccttgggcca
ccgcagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcagtggcccag
gccacaggtcggcagctggagtccgtccgggctgaggcagccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcttccggggtcttcagcaagttccgtgacatcgccaggctcactggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctgcgcctggggctggcagagcagtcggtgctg
gctgccctctcccaggctgtgagcctcacgcccccaggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggtgcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccagagcactgcaagctgagcccagggattcccctg
aaaccaatgttggcccatcccacgcggggcgtcagcgaggttctgaaacgctttgaggag
gcagctttcacctgcgaatacaaatacgatgggcagagggcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactggaaagtacccggac
atcatcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacacc
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaagtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggacagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctctctggac
accaaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgtcgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggaacatcaccagagcctcaaggccctggtgctgcccagcccc
cgcccttatgtgcggatagatggtgccgtgactccggaccactggctggaccccaatgct
gtgtgggaggtgaagtgtgccgacctctccctctctcccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcacaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
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