Rhinopithecus roxellana (golden snub-nosed monkey): 104675100
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Entry
104675100 CDS
T03989
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104675100 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rro03400
]
104675100 (LIG3)
Enzymes [BR:
rro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104675100 (LIG3)
DNA repair and recombination proteins [BR:
rro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104675100 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104675100
NCBI-ProteinID:
XP_010377857
UniProt:
A0A2K6NLY5
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All DBs
Position
19:51839115..51862260
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AA seq
1009 aa
AA seq
DB search
MSLAFKILFPQTLRALSRKELCLFQEHHRPDVRQFSQWSETDLLHGHPFFLRRKPVLSFQ
GSHLRSRATCLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGICRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKSASFVTSNNPRKFSGFSAKANNSGEAP
SSRTPKRSLSSSKCDPKHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH
GDVYLTVKLLLPGVVKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
SKSFPPAAKSLLTIQEVDEFLLQLSKLTKEDEQQQVLQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKASDLADMITRVIREGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGNLSNSNSKGGNMLTAKPS
AVKVGERLAMKSSPVKGGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFV
AFDGDLVQEFDMTSATHVLDSRDKNPVAQQVSPEWIWACIRKRRLVAPC
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggctttcaagatcctctttccacaaaccctccgtgcactcagccgaaaagaa
ctgtgcctattccaagaacatcacaggcctgatgtaagacaattcagccagtggtcagaa
acagatctgcttcatggacaccccttcttcctgagaagaaagcctgttctgtcattccag
ggaagccatctaagatcacgtgccacctgccttgttttcttgccagggttgcatgtggga
ctctgcagtggcccctgtgagatggctgagcaacggttctgtgtggactatgccaagcgt
ggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggcatatgccgaattggc
aaagtggtgcccaatcccttctcagagtctgggggtgatatgaaagagtggtatcacatt
aaatgcatgtttgagaaactagagcgggcccgggccaccacaaaaaaaatcgaggacctc
acagagctggaaggctgggaagagctggaagataatgagaaggaacagataacccagcac
attgcagatctgtcttctaaggcagcaggtacaccaaagaagaaagctgttgtccaggct
aagttgacaaccactggccaggtgacttctccggtgaaaagcgcctcatttgtcaccagt
aacaatccccggaaattttctggcttttcagccaaggccaacaactctggggaagccccc
tcaagccgcacccctaagagaagtctgtcttcaagcaaatgtgaccccaagcataaggac
tgtctgctacgggagtttcgaaagttatgcgccatggtggccgataatcctagctacaac
acgaagacccagatcatccaggacttcctgcggaaaggctcagcaggagatggtttccac
ggtgatgtgtacctaacggtgaagctgctgctgccaggagtcgttaagactgtttacaac
ttgaatgataagcagattgtgaagcttttcagtcgcatttttaactgcaacccagatgat
atggcacgggacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtctttccccccagctgccaagagcctccttaccatccaggaggtggatgagttc
cttctgcagctgtccaagctcaccaaggaggatgagcagcaacaggtcctgcaggacatt
gcctccaggtgtacagccaatgaccttaaatgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaaacatgtgttagacgcccttgaccccaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcaggatgtggtggagcgggtccttcacaatgcgcaggag
gtggagaaggagccgggccagagacgagctctgagcgtccaggcctcgctgatgacacct
gtgcagcccatgctggcggaggcctgcaagtccattgaatacgcaatgaagaaatgtccc
aatggcatgttctctgagatcaagtacgatggagagcgagtccaagtgcataagaatgga
gaccacttcagctacttcagccgcagtctcaagcccgtcctgcctcacaaggtagcccac
tttaaggactacatcccccaggcttttcctgggggacacagcatgatcttggattctgag
gtgcttctgattgacaacaagacaggcaaaccactgccctttgggactctgggagtgcac
aagaaagcagccttccaggatgctaatgtctgcctgtttgtttttgattgtatctacttt
aatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgacaac
atggttgaaattccaaaccggatcatgttctcagaaatgaagcgagtcacaaaagcttcg
gacttggctgacatgataacccgggtgatccgggagggattggaggggctggtgctgaag
gatgtgaagggtacatatgagcctgggaagcggcactggctgaaagtgaagaaagactat
ttgaacgagggggccatggccgacacagctgacctggtggtccttggggccttctatggg
caagggagcaaaggcggcatgatgtcaatcttcctcatgggctgctacgaccctggcagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccatgatgacgccacgcttgcccgc
ctgcagaaggaactagacatggtgaagatcagcaaggaccccagcaaaatacccagctgg
ctgaaagtcaacaagatctactatcctgacttcatcgtcccagacccaaagaaagctgcc
gtgtgggagatcacaggggctgaattctccaaatcggaggctcacacagctgatgggatc
tccatccgattccctcgctgcacccgaatccgagatgataaggactggaaatctgccact
aaccttccccaactcaaggaactgtaccagttgtccaaggagaaggcagacttcactgta
gtggctggagatgaggggagctccactacagggggtagcagtgaagagaataagggtccc
tcagggtctgctgtgtcccgcaaggcccccagcaagccctctgccagtaccaagaaagca
gaagggaacctgagtaactccaacagcaaaggcggcaacatgctgactgcaaagccttct
gctgtgaaggtgggagagaggctggccatgaagtcttctccagtgaaaggaggggagaag
cggaaagctgctgatgagaccctgtgccaaacaaaggtactgctggacatcttcactgga
gtgcggctttacttgccaccctccacaccagacttcagccgtctcagacgctactttgtg
gcattcgacggggacctggtacaggaatttgatatgacctcagccacgcatgtgctggat
agcagggacaagaaccctgtggcccagcaggtctccccagagtggatttgggcatgtatc
cggaaacggagactggtagctccctgctag
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