Rhipicephalus sanguineus (brown dog tick): 119376657
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Entry
119376657 CDS
T07382
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119376657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119376657
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119376657
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119376657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
119376657
NCBI-ProteinID:
XP_037502351
EnsemblRapid:
LOC119376657
LinkDB
All DBs
Position
1:248088144..248189673
Genome browser
AA seq
2422 aa
AA seq
DB search
MNLDPLSFALSYISYSVSSLTKKNFKSSVQEISRLVALHGFEAERHLLRCLFSHVDFSGD
GKSSGKDFHQTQYLIQEFSSVISKPNFVSTVCFAIENPLHHQKSLRPSPLLLPHISRVLR
LNRVQEVVLGTCLLHSSSADLCNCATQFIRLKLPDLLRSYTDSDSSTQEGDLQDCSPEVL
HLLLVELLNKNSEHFGVTNELKESFFENLRKDFPRDRVPVVLAPLLYSEASDVLMVKGMT
EPASNMSKPMELSHVDLIKEVGYGFTASVEECRQSLIQMGLRDPGPCMVARVLSMMANTH
TGLSEPLQGLGPSATSPWGADKDANTSHVTWNIDIFIQALYDLVPTLNWKEVVGELDFPG
FFVKDRQGLKLLWHGLCRGLGSEPFPTDRLYRVWRNPDSQLSLFHQIMKNSDIVCLTDYK
YRPVSMEILKALPEDDNRDIANWKSLDLVETLLNLSDKVQYSSHVHDLFKYPVQHCPDLL
MLGLLQASGPMQGFRQELLTNLVFVFLSNHPNSAIVLQAAWNVQSHANVVRPLIMHTMAD
WYMRGGESEQGRLSRILDVAQDLKALSVLLSSNSFPLVIDLACLASRREYLKLDKWLTDK
IFEHKEAFIQACVNFLKRRCPQIMGGIVKEENLPKSAQLPAETLATMLSCLQQYAGSVSQ
ELSETILTMSGNCSILLNKPRQPPPGVVKTPRGLEPAFSAASLNPSQAPQQQQQQQQQQQ
QQLEVLSSLGSLSMSGPAAAQAPPLGVGGGPPLFGSSFATPGSPAKLFGAPPSAAGSTGP
PPPAQGTGFSNVVPSLGDVASILPEMNQPVSKEIEDEANGYFQRIYNHPPHPTLSIAEVL
DMLKRFQESPIKSERDVFNCMIKNLFEEYRFFPQYPEKELIITAQLFGGIIEQSLVTYMA
LGLALRYVLDALRKPFGTKMYYFGITALDRFKTRLKDYPQYCQHLASIPHFKDFPEHLKE
YVDCGARSQEPVNRPQGQTLPHNLAMLAQGLNPAATPQGSAVRAAPAAVPTSSAGLAASS
GVVTKPTTVGGKDACPSTPPCPSFTGFRGIDHKYCLRQLDPNAKRDTPSIANPTNIDTLL
GATEKDDKLVIPPEAVQDKVAFIINNLSQMNLPQKTEEFKEVVKEEYWPWFAQYMVMKRA
SIEPNFHTLYANFLDTVKIGELSKLVLRETFRNIKVLLTSDKALANFSDRSLLKSLGHWL
GMLTMAKNRPVLQVDMDVKSLLVEAYHKGQQELLYVVPFIAKVLESCAKSKVFKPPNPWT
MGILDVLSELHREPELKLNLKFEIEVLCKTLNLDINDLKPGMILKDQERRKRLDPQLSPR
HKVESPPLPPSVVPPTAAPPSAAPPPLAPQVPSGVVTAAAGPGGPVAQVGLPPPQPEEAP
ATLGVSGASMAAFPQPQFSYHDINVLSMTNLAQHIQINSQLPLFQAHPHLKQYVRTAIDR
AIQEWIMPVVERSLKIALTTCDQIVRKDFALDPEESRLRAAAHHMVRSLTAGMAMITCRD
PMLMTISNNLKAAFHTALRLQGASLPQKELLEQATTVVAQENVELACCFIQKTAIEKAIP
EIDKKLSQEYEFRKSARSENRRYCDPVVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFAR
NIPGFQPISERDQPSLFLPKPVVRQTGFASSVDDMTHLYDKIVSELEQQVHGLLGTVVPS
NPQVAALHVLHEAVLVARNSREAVTAMALLQKTVESMAEGLSHSLGADPETALRFREAHL
AVLKALAEGYGHPWAAKHITRFLLELREEIRWNVDVVDPLLRSGLLVLATFDLHLAQSME
NGMNYPAVDFAKQLVRLYFSEGRHGDYNLSESDLCNTLETLVRINAHSRQPQEGLSQVME
MLRSGSGGGAVEYGGVPSSGPMSMMHSGISQAREYDDPPGLHEKTEFLLREWVSMYNAPT
AGKDSTKAFQIFVQQMNVQGILKTDDLITRFFRLSTEMCVEHCYRALLEQTPNNATIVRS
KCFNSLDAYMRLIALLVKLSGDASNPTTKVNLLNKVLGIVAGVLLQDHESRGLEFQQLPY
HRIFMMLFLELSAPEAVLEAIGFHVLMAFCNTLHVLQPCKAPAFAYSWLELISHRVFLGR
VLALTPQQKAWGMFAQLLNDLFKFLAPFLRNVDLEKPIQLLYKGTLRVLLVLLHDFPEFL
CDYHYGFCDLIPANCIQMRNLILSAFPRHMRLPDPFTPNLKVEVLPEITQAPRVLTNFAS
VIQPQSFKKDLDSYIKTRGPVTFLSELRSNLQATTEPGINYNVPLMNALVLYVGTQAIAY
IQSKSLTPSMSTITHSSHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLL
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLVTFIDLIKNPTFKFWSHEFVRCAPEI
EKLFESVARSCMQQKPPTEPSG
NT seq
7269 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagatccgttgtcttttgctttgtcttatattagttattctgtgtccagcttg
acaaagaagaacttcaagtccagtgttcaagagatttcccgccttgttgccctgcacggg
tttgaggcagagcggcatctgcttcgttgccttttttcccacgttgacttcagtggagat
ggtaaaagtagtggaaaggacttccatcagacccagtatttgatccaagagtttagctct
gttatttccaagcctaattttgtgtcaactgtgtgttttgctatagaaaatcctcttcac
catcaaaagagtcttcgaccaagccccttgttacttccccacatcagccgtgtactaaga
ctgaatcgtgtgcaagaagttgttcttggcacttgtttgcttcattcctccagtgcagat
ctctgcaattgtgccacacagtttattcgactgaagcttcctgaccttttacgatcttac
acagactcggactcatccacgcaggagggcgatcttcaggactgcagtcccgaggttctt
caccttttgcttgtagagttattaaacaaaaactctgagcactttggtgtcactaatgaa
ctgaaggagtctttttttgaaaatctccgtaaagattttcctcgggatagagtgccagtt
gttttagcaccactgctgtacagtgaagcatctgatgtgctgatggtaaaaggaatgact
gagccagcttcaaacatgtcgaaaccaatggaattgtcacatgttgatctcatcaaagaa
gtgggttatggctttactgcaagtgtggaagaatgtcgccagagcttgatccagatgggt
ctacgagaccctgggccatgcatggtggccagagtgctgtccatgatggccaacactcac
acaggcctttctgagccactccaaggccttgggccatcagcgacgtctccttggggtgct
gacaaggatgccaacacaagccatgttacttggaacattgacattttcattcaggcactc
tatgacctggtacctacactaaactggaaagaagtggttggtgaactggacttcccaggc
ttttttgtgaaggatcgacaaggcctgaagctcctgtggcatggtttgtgcagagggctg
ggcagtgagcccttccctactgaccgcttgtacagagtttggaggaacccagactcccag
ctatcattattccaccaaattatgaaaaattctgacattgtttgcctgaccgactacaag
taccggccagtgtcgatggagattttgaaggcacttcctgaagatgacaacagagacata
gccaattggaaatctttggaccttgtagaaactctcctgaacttgtctgataaagtgcag
tactcatcacatgtacatgatttgttcaaatatcctgttcaacattgtcctgacttgctg
atgcttgggcttctacaagcttcggggcccatgcaagggtttcgtcaggaactgttgaca
aaccttgtatttgtgttcctgagcaatcatcccaattcggcaatcgtgcttcaggcagct
tggaatgttcagagtcatgcaaatgtggttcggcccttgataatgcacaccatggctgac
tggtacatgcgtggtggagaaagtgagcaaggacgtctgtcccgaattctggatgttgct
caagacctgaaggccctctctgtgctactaagcagcaactcctttcctctggtgattgac
ttggcctgcttggcctcacgcagagaatatctcaagcttgacaagtggctcactgacaag
atctttgagcacaaggaggcattcattcaagcctgtgtcaatttcctgaagcgtaggtgt
ccccagattatgggtggcatagtcaaggaggagaatttgccgaaaagtgctcaactacca
gctgaaacattggccactatgctttcctgtctgcagcagtatgcaggcagtgtcagtcag
gagctttcggaaaccatcttgacgatgtcaggaaattgtagtattctgctgaacaagcca
cgccaaccgccaccaggtgttgtcaaaacacctaggggcttggagccagcattttcagcc
gccagcctcaatccatctcaggctcctcagcaacagcagcaacaacagcagcagcaacag
cagcagctggaagtcctcagctcattgggaagcctgtccatgagtggcccagctgcagcg
caagccccaccacttggtgtgggaggtgggccacccctgtttggcagttcatttgccacc
ccaggctcaccagccaagctttttggtgcgcccccaagtgcagctggttcaactgggcca
ccacctcctgctcaaggaactggcttttccaacgttgtgcccagccttggagatgtagca
agcatactccctgaaatgaaccagcctgtgtcaaaagaaattgaagatgaagctaatgga
tattttcagcgcatttacaaccatcctccgcatccaactttgtccattgctgaggttttg
gacatgctgaagcgtttccaagagtctcccatcaagtctgagagggatgtgttcaattgc
atgatcaagaacctgtttgaagaatacaggttcttcccacagtatcctgaaaaagagctc
attataacagcacaacttttcggaggcatcattgaacagagtcttgtaacatacatggct
ctggggctggccctccgctatgttctggatgcccttcgcaagccgtttggtaccaagatg
tactactttggcatcactgcactggaccggttcaaaacaagattgaaggactacccacaa
tattgccagcacttggcgtccattccacatttcaaggactttcctgagcatctgaaagag
tatgttgactgcggtgcacggtctcaggagcccgtgaatcggccccagggtcagaccttg
cctcacaatctggctatgttggctcagggactgaacccagcagcaactccccaaggttct
gcagtacgagctgcacctgctgcagtgcctacatccagtgcaggtctggcagcttcctct
ggagtggtcacaaagcccaccactgttgggggaaaggatgcatgtcccagcactccgcca
tgtccgtcattcactggctttcgaggcatcgatcacaagtactgcttgagacagctcgat
ccaaatgcgaagcgggatacgccatccattgccaaccccacgaacatagatactttgctg
ggagccactgagaaggatgataagctggtaataccaccagaagctgtccaagacaaagtg
gcctttatcatcaacaatctttcccaaatgaatcttccccaaaagactgaggagttcaag
gaggtggtgaaagaagaatattggccatggtttgcccagtacatggtgatgaagagagca
tctattgaacctaatttccatacactgtatgccaattttctggacactgtcaagataggg
gagctttcaaagcttgtactgcgggaaacatttcgtaacataaaagttcttctgaccagt
gataaggcactagccaatttttctgaccgatctctgttgaaaagcctaggccattggtta
ggaatgttaaccatggcaaaaaatagacccgtgcttcaagttgacatggatgtgaagtcc
ctacttgttgaggcataccataaagggcaacaggaactgctttatgtggtgccatttatt
gccaaagttctggaatcctgtgcaaaaagcaaggttttcaagcctcccaatccttggacc
atgggaattttggatgtactgtcggagttgcaccgagaaccagagctgaagttgaaccta
aagtttgagattgaggttttgtgcaagacgctaaacctggacatcaatgacctcaagcca
ggtatgatactgaaggaccaagagcgtcgcaagcgactggacccacagctgtcgcctcgg
cacaaggttgaaagccccccactgcccccttctgtggtacctcccacggcagcaccacct
tctgctgcccctccacctctggcaccccaggtaccttcgggggttgtgacagcggcagca
ggtcctggagggcctgtagcacaggtggggttgccgccgccacagcctgaggaggcacct
gcaacgttgggtgtatctggggcatcaatggccgctttccctcaaccgcagttttcctac
catgatatcaatgtgctttctatgaccaatttagcgcagcacatccagataaacagccag
cttccactgtttcaggcacatcctcatctaaaacagtatgtgcgcacagcaatcgatcgt
gcaatccaggaatggataatgccagtggtggaacgctctctgaaaattgcactgacgacg
tgtgatcagattgttcgaaaggactttgctttggatcctgaagagtcccggttgcgtgca
gcagcccaccacatggtgcggagcctgacagctgggatggctatgattacttgcagagat
cctatgttgatgaccatcagcaacaatctgaaagctgcctttcacacagcactgaggctt
caaggagcaagccttccacaaaaagagctcttggagcaggcaaccacagtggtcgcccaa
gagaatgtggaactggcctgctgtttcatccagaagactgccattgagaaagccattcct
gagattgacaagaagcttagccaggaatacgagttccgcaaaagtgctcgcagtgaaaac
cgccgctactgtgaccctgtcgtcttgacctaccaagctgagcggatgcctgagcagatt
cgactcaaggttggtggtgtgactcctcagcaaatggcagtatatgaggaatttgcccgg
aacatccctggttttcagcctatttctgaaagagatcagccttccttgtttcttccaaag
cctgtggtgcggcaaactggctttgcaagttccgtggatgacatgacacatttgtatgac
aagattgtttctgagttggagcagcaagttcatggactactaggtactgttgtgccctca
aacccacaagttgcagccctccatgtgctacatgaggcagtgctggtggcacgcaactcg
agggaagctgttacagccatggctttgcttcaaaagacagtggagagtatggctgaaggg
ctcagccactcgctgggagcagaccccgagactgcgctgcgctttcgcgaggcccacctg
gcagtgctgaaggcactggccgagggttacggtcacccgtgggcagccaagcatataacg
cgcttccttctggagctgcgcgaggagattcgttggaatgtggatgtagtggaccctctg
ctgcgatcaggcctgctggtgttggccacgtttgacctacatctggctcaatccatggag
aatggcatgaactacccagcagtcgactttgccaagcagctggtgcgcttgtacttctct
gaaggtcgtcatggtgactacaacctttcagagtcggacttgtgcaataccttggagaca
cttgtgcgcatcaatgctcactcgaggcagccacaagagggattgtcccaagtaatggag
atgctgcgtagtggaagtggcggaggcgcagtggagtacgggggtgtgcctagcagtggg
ccgatgtcaatgatgcactcaggcatcagccaggcacgcgagtatgatgacccacctggc
ctgcatgagaagacagaattcctgctacgggagtgggtgtccatgtacaatgctcctact
gctggcaaagattctaccaaggcattccagatatttgtacagcagatgaatgtgcaaggt
attttgaagactgacgacttgatcacccgattctttcgtctgagcaccgagatgtgtgtg
gagcattgctacagggccctcttggagcagacacccaacaatgcaactattgttcgctca
aaatgtttcaactcccttgatgcatacatgcgcctgatagccctgctggtcaagctcagt
ggagatgcgtccaacccaacaaccaaagtcaacctgctgaacaaggtgcttggcattgtg
gctggtgtactacttcaggatcatgagtcacgtggcctggagttccaacagcttccttac
caccgcattttcatgatgcttttccttgagctgagtgcacccgaggcagttctggaagcc
attggctttcatgtgctgatggccttctgcaatactctgcatgttctgcagccatgcaaa
gcccctgcttttgcctactcttggctggaactcatctcgcatcgtgtgtttttgggccgt
gtccttgctctgactccccaacagaaagcatggggaatgtttgcccagctgctcaatgac
ttattcaagtttctggctcccttccttcgcaatgtggaccttgagaagcctatccagctt
ctttacaagggcacgttgcgggtgctgctggtgctgctccatgacttcccagagtttctg
tgcgattatcactatggtttctgtgacttgattccagcaaactgcattcagatgcgcaac
ctaatccttagtgcatttcctcgacacatgcgcctgcctgatcctttcacaccgaacctg
aaggtggaagtactgccagaaatcacgcaagcccctagagtcctcaccaactttgcttca
gtcatccagcctcagagcttcaaaaaggatttggactcttatatcaaaacacggggtcct
gtgacatttctgtcagaacttcgcagtaatcttcaggcaacaactgaacctggcattaac
tacaatgtgccattgatgaatgcactggtgctctatgtgggcacccaggccattgcttac
attcaaagcaaaagcctgactcccagcatgagcacaatcactcattcatcgcacatggac
atattccagaacttggctgttgacctggacactgaaggacggtaccttttcttgaatgca
attgcaaaccagctacggtacccgaacagtcacacccattacttcagctgcacgctgctg
tacctgtttgctgaagccaacactgaagccatccaagaacaaataacaagggtattgctg
gaacgcctcattgtgaatcgtccacacccatggggtctcctagtaaccttcatcgacctg
atcaagaacccaacattcaagttctggagccacgaatttgtgcgttgtgcaccggaaatt
gaaaagctatttgagtctgtggcaagatcctgcatgcagcagaagccacccactgagcct
tctggttag
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integrated database retrieval system
