Ralstonia solanacearum CFBP2957: RCFBP_20205
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Entry
RCFBP_20205 CDS
T01272
Symbol
rnr
Name
(GenBank) RNase R, 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rsc
Ralstonia solanacearum CFBP2957
Pathway
rsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCFBP_20205 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsc03019
]
RCFBP_20205 (rnr)
03016 Transfer RNA biogenesis [BR:
rsc03016
]
RCFBP_20205 (rnr)
Enzymes [BR:
rsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RCFBP_20205 (rnr)
Messenger RNA biogenesis [BR:
rsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RCFBP_20205 (rnr)
Transfer RNA biogenesis [BR:
rsc03016
]
Prokaryotic type
tRNA degradation factors
RCFBP_20205 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Dimerisation
HTH_11
HTH_12
Motif
Other DBs
NCBI-ProteinID:
CBJ43397
LinkDB
All DBs
Position
complement(2177658..2180249)
Genome browser
AA seq
863 aa
AA seq
DB search
MNQPTYPIPSREEILGVLRTSGSPLSAADIAKALSVTRKEHDGFIKRLTAMERDGQLELN
RKGRYELAHQPNFIEGRVVGHRDGFGFFIRDDGEPDIFLPEREMQKAMHGDRALVRVIGY
DRRGRSEGQIVEILERANRYVIGRLLSESGTLVVAPEDKRLGRDILIAPKGQGKAKVGQV
VSVEILEYPDRYVQPIGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSDAALGESEALPDE
VRESDLAGRIDLRDVSLVTIDGEDARDFDDAVYCEPVKIGRSKGWRLIVAIADVSHYVQP
GKSLDVDAIDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGQIKAY
QFYPAVMHSAARLTYNEVWSILSNVKGPEAAKRAPLVPHLQDLYELFQVLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAAEMLERYKHPALYRVHA
GPTEEKLQALRAFLKTSGLTLGGGDKPQAADYAELMEKIVARPDAPMLQTMLLRSMQQAV
YSPDNVGHFGLSYEAYAHFTSPIRRYPDLLVHRSIKAILQHSRYVPAMAPGVQLNSALSP
KARRMQAEADKGTPAAVASKAKVEAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDK
LGNEFSGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQFDEARNELRGERTGIRYRL
TDRVRVQLLRVDLDARKMDFRLIQEPSVKALRPAKVAGAPAEAGVRQPAVATPAPPVGRK
KPRQLAALLGGTAKPEESFDETLDRVFEEQPVFEPGPRALPPGHAHAKPSRKKPAARATK
PKTGGKTVTRKAAGKSARSRKGR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaaccgacttatccgatcccgagccgcgaggaaatcctcggtgtgctgcgcact
tcggggtctccgctgtctgccgccgacatcgcaaaggcgctgtctgtcacgcgcaaggag
catgacggcttcatcaaacggctgaccgccatggagcgggacggccagctcgaactcaac
cgcaaggggcgctacgaactggcgcaccagcccaactttatcgaaggccgcgtggtcggc
caccgggacggcttcggtttcttcatccgcgacgatggcgaacccgacatcttcctgccc
gagcgcgagatgcagaaggccatgcatggcgaccgggcactggtgcgcgtgatcggctat
gaccgccgcgggcgttcggaagggcagatcgtcgagatcctggagcgcgccaaccgctat
gtgatcggccggctgttgtcggagagcggcacgctggtggtggcgcccgaggacaagcgc
ctgggccgcgacatcctgatcgcgcccaaggggcagggcaaggccaaggtcggccaggta
gtgagcgtggagatcctggagtacccggatcgctacgtgcagccgatcggccgtgtggtc
gaggtgctgggcgagatcgatgatcccggcatggagatcgagattgcggtgcgcaagtac
ggcgtgccgcatgcgttttccgacgccgcgctgggcgagtcggaggcgctgcccgatgag
gtgcgcgaatccgacctggccggccggatcgacctgcgagatgtttcgctggtcaccatc
gacggcgaggatgcgcgcgactttgacgacgcggtttactgcgagccggtcaagatcggc
cgtagcaagggttggcgcctgatcgtggcgatcgccgacgtgtcgcactatgtgcagccg
ggcaagtcgctcgacgtggacgcgatcgaccgcgcgacctcggtctacttcccgcggcgc
gtgatcccgatgctgccggagaagctgtccaacggcctgtgctcgctgaatccggaggtg
gaccgcctgtgcatggtctgcgacgcggtgatcacggccaaggggcagatcaaggcgtat
cagttctatccggccgtgatgcactcggcggcgcgcctgacctacaacgaggtctggtcg
atcctgtccaacgtgaagggaccggaggcggccaagcgggcgccgctggtgccgcatctg
caggatctgtacgagctgttccaggttctgctgaaggcgcgccgcgagcggggcgccatc
gacttcgataccaccgagacctatatcgtctgcaatgcgcagggcaagatcgaacagatc
ctgccgcgcacccgcaacgacgcgcaccggctgatcgaggagtgcatgctgaccgccaac
gtctgcgcggcggagatgctggagcgctacaagcatccggcgctgtatcgcgtgcatgcc
ggcccgaccgaagagaagctgcaggcgctgcgcgcgttcctcaagaccagcggcctgacg
ctgggcggcggcgacaagccccaggcggccgactacgccgagctgatggaaaagatcgtc
gcgcgccccgatgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggcggtc
tacagccccgataacgttggacacttcggcttgtcgtacgaagcctatgcgcacttcacc
agcccgatccgccgctatccggacctgctggtgcatcgctccatcaaggccatcctgcag
cattcgcgctatgtgcctgcgatggcaccgggcgtgcagctcaacagcgcactgtcgccc
aaggcgcgccgcatgcaggccgaagccgacaagggcaccccggccgccgttgccagcaag
gccaaggtcgaggcgatctggcacgaactgggtgtgcactgctcggccaacgagcgccgc
gccgacgaggcctcgcgcgacgtggaggcctggctcaagtgctacttcatgcgtgacaag
ctgggcaacgagttctccggtaccgtcagcgcggtcacatcgttcggtatcttcgtccag
ctcgacgagttgtacgtggagggcctggtgcatgtgaccgagctgggcagcgactatttc
cagttcgacgaggcccgcaatgaactgcgcggcgagcgcaccggcatccgttatcgactg
accgatcgcgtgcgcgtgcagttgctgcgcgtcgatctggatgcgcgcaagatggatttc
cggctgatccaggagccgtcggtcaaggcactgcgcccggccaaggtggctggtgcgccg
gcagaagcgggcgtgcgccagccggccgtcgccacgccggcgccgccggtcggacgcaag
aagccgcgtcagttggcggctttgctgggcggcacggccaagccggaggaatcgttcgac
gagacactggaccgcgtgttcgaggagcagccggtgttcgagccggggccgcgtgccctg
ccgccgggccatgcgcatgccaagccgtcgcgcaagaaaccggccgcgcgcgcgaccaag
cccaagacgggcggcaagaccgtgacgcgcaaggcggcgggcaagtccgctcggtcgcgc
aaggggcggtga
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