Candidatus Endomicrobium trichonymphae Rs-D17: TGRD_636
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Entry
TGRD_636 CDS
T00755
Name
(GenBank) D-alanine-D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rsd
Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
rsd00470
D-Amino acid metabolism
rsd00550
Peptidoglycan biosynthesis
rsd01100
Metabolic pathways
rsd01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
TGRD_636
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
TGRD_636
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
TGRD_636
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rsd01011
]
TGRD_636
Enzymes [BR:
rsd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
TGRD_636
Peptidoglycan biosynthesis and degradation proteins [BR:
rsd01011
]
Precursor biosynthesis
Amino acid ligase
TGRD_636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
CPSase_L_D2
ATP-grasp_3
GARS_A
RimK
ATP-grasp
ATPgrasp_YheCD
TTL
Motif
Other DBs
NCBI-ProteinID:
BAG14119
UniProt:
B1GYM6
LinkDB
All DBs
Position
complement(934409..935329)
Genome browser
AA seq
306 aa
AA seq
DB search
MTDSDILAKLSNKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEI
KKEKIDVAYIALHGPMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADIL
TPEWKMLKKFGTVPEIKKYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIE
QFIEGKEVTVGVLNGKALPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNY
AEKVYEIFKCRAICRVDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLK
ITESAL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgatattttggcaaagttgagtaataaaaaaataggcgttttgtacggc
ggactttcaagcgaaagagaaatttcaattaagtccggcaaagctgttttaaacgtattt
aaaaaattgaaactgaatgtgtgtggcattgatgtaaacagaagcattgctgaagaaatt
aaaaaagaaaaaatagatgttgcgtatatagctttgcacggtccgatgggcgaagacgga
acaattcaaggtatgcttgaaatattgggcattccttatacgggcagcggtatttttgca
agtgctgcttctatagataaagatgtttcaaagaaaatattcaaatatgcggatattttg
acgcctgaatggaaaatgttgaagaaatttggaaccgtgccggaaataaaaaaatatccc
gtagttgtaaaaccggtttcgcagggatctacaataggtgtggcaatagtgaagagacct
tcagagtttgctgctgctgtgaaagaggtgtttaagtatggcgacgaagctcttattgag
cagtttatagaaggcaaagaagtgaccgtaggagttctgaacggcaaagcgttgcctgtg
gtggaaatagttcccaaaggaaaattttatgattttaaggctaaatatcaaaaaggcggt
tcgcagcatataattcccgcgggaataagcgaagaggcttatgaaacggtgcagaattat
gctgaaaaagtgtatgaaatttttaaatgcagagcgatatgccgtgttgatatgattgta
gatagaaaagatagagtatgggtttttgaaaataatactattcccggaatgacggagact
tctttggttcccgacgaaagtagagctgtcggatatagttttgaaagtttggttttaaaa
ataactgagagcgcattatag
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