Cereibacter sphaeroides ATCC 17029: Rsph17029_1337
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Entry
Rsph17029_1337 CDS
T00484
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rsph17029_1337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsh03400
]
Rsph17029_1337
Enzymes [BR:
rsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rsph17029_1337
DNA repair and recombination proteins [BR:
rsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rsph17029_1337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABN76447
UniProt:
A3PJD1
LinkDB
All DBs
Position
1:complement(1385803..1388409)
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AA seq
868 aa
AA seq
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MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWDFRLEWNG
VLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDRGTWEPQG
DFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDTHESEQTEELVER
HMTSVATGRTMEQIAAGKAPRRRTRKADLPAFRPLQLARLVPAAPEGEDWIHETKFDGYR
CLAALAGGRARLYTRSGLDWTAKFGALVEDIEALEAEEALIDGEVIAPGREGGSFSELQA
RLKSGGQLLFMAFDLLLLDGEDLTGQPLLARKERLETLIGKGRGAVRFSGHIRGHGPEVH
ERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFVICGWNASDKPGRPFASLVMG
SYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQSACPFDRTPAEAKGAHWLKPELVAEV
SFTELTAEGHIRHGVFAGLRRDKDAREVRLEEPAPETPATRKSGVRKKGTKTARPDAPSP
DEPAPEPARKPRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAITKHEVAEHAEA
LAPRMLRFLKDRPVSLLRCPDGAAAECFFQKHRTRGMPAAMKTVTVETKSGPEDFITLPD
VAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEGLDFAHVRTAAAELRGLLADL
GLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTATMAKAGRKGR
IFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCP
LAEASARPATLGRTVIGRLERLVAGGKP
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccaacccgcgacaggatctcgaccgctaccgcgccaagcgcgacttcgcgcgc
acgcccgagccgcagggccgctccgaggcgccgcgccccgaggcggagagcctgtcgttc
gtcgtgcagaaacatgcagcctcccgtctgcactgggatttccggctggagtggaacggc
gtccttctgagctgggccgtgacgcgcggcccctcgcccgatccgtccgcccgcaggctt
gcggtgcgaaccgaggatcatccgctggattatgccgagttcgagggaacgatccccaag
ggcgaatatggcggcggcacggtcatgctctgggaccggggcacctgggaaccgcagggc
gactttgcggaggggctgcggaccggtcagctcaagatccgcctcgcgggcgagcggatg
cgcggccgctggacgctggtgcgcatgaaacccaggccgcgcgagaaggccgagaactgg
ctcctcatcaaggagcacgacacgcatgaaagcgagcagaccgaggagctggtcgagcgg
cacatgacctcggtcgcaacggggcggaccatggagcagatcgccgccggcaaggcgcca
agacggcgcacgcgcaaggccgacctgcccgccttccggccgctccagctcgcgcgtctc
gttccggcggcgcccgagggagaggactggatccacgagaccaagttcgacggctaccgc
tgcctcgcggccctcgcgggaggccgggcccgcctctacacccgctccggcctcgactgg
acggccaagttcggcgccctcgtcgaggatatcgaggcgcttgaggccgaggaggcgctg
atcgacggcgaggtgatcgcgccgggccgggagggcggctccttttcggagctgcaggca
cggctgaaatcggggggccagctcctcttcatggccttcgacctactgctcctcgacggc
gaggacctgaccggacagccgcttctcgcgcggaaggagcggctcgagacgctgatcggc
aaggggcgcggcgcggtgcgcttctcgggccacatccgcggccacggccccgaggtgcac
gagcgcatctgtgcggcaggcctcgaagggatcgtctcgaagcgggcctccgcgccctat
gcgggcagccggaacggcgactggctgaaggtgaaatgcgcgcaccggcaggaattcgtg
atctgcggctggaacgcctcggacaagccgggccgtcccttcgcctcgctggtgatgggc
agctacgaaaagagccgtctggtctaccgcggcagtgtcggcagcggcttcggcgccccc
ctgttccgcgagttgaagccgcttctggccgaacgggcgcaaagcgcctgccccttcgac
cgcacgccggccgaggccaagggggcgcactggctgaagcccgagctggtggccgaggtg
agcttcaccgaactgacggcggaggggcacatccggcacggggtcttcgccggcctgcgg
cgcgacaaggacgcgcgcgaggtgcggctcgaggagcccgcgcccgaaacgcccgcgacc
cggaagtcgggcgtgcggaagaaggggacgaagacggcccggccagacgccccctcaccc
gacgagcccgcccccgagcctgcccggaaaccccggacggcgcgcggggagaagaaggag
acgacgatggcccgacccgacgacctgcgcgtcgcaggcatccgcatcagccaccccgac
cggcggatctacgaccggcctgccatcacgaaacacgaggtggcggagcatgccgaggca
ctggcgccgcggatgctgcgcttcctgaaggatcgccccgtctcgctcctgcgctgcccc
gacggggcggcggcggagtgcttcttccagaagcaccgcacccgcggcatgcccgccgcg
atgaagacggtgaccgtcgagacgaaatcgggacccgaggatttcatcaccctgcccgat
gtcgcggctctggtcggggccacgcagatggggacactcgaattccacatctggggctcg
cgcaaccgcagccttcagcgaccggaccggctggtgttcgatctcgaccccgacgagggt
ctcgacttcgcccatgtgcggaccgcggcggccgagctgcgcggtctgctcgcggacctc
ggcctgccctcggtgccgatgctgtccggcggcaagggggtgcatgtgatcgtgccgctg
aagcccaaggccgaatgggagagcgtgaagctcttctcgcgggcgctcgccacccatctg
gctcaggaggcgcccgaccgctacacggccacgatggccaaggccgggcgcaagggccgg
atcttcatcgactggctgcggaacgaccgcggctcgacggcgatcgctccctacagcctg
cgcgcccgcccgggcgcgccggtggcgacgccggtcgactgggacgaactcgcctcggcc
cggtcgggcggcgactggacgatccgctccatccgcgaccggctcgaccggccctgcccg
ctggccgaggcctccgcccggcccgcgacactgggccggaccgtgatcgggcggctcgag
cgacttgtggcaggagggaaaccatga
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