Cereibacter sphaeroides KD131: RSKD131_0994
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Entry
RSKD131_0994 CDS
T00844
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsk
Cereibacter sphaeroides KD131
Pathway
rsk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RSKD131_0994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsk03400
]
RSKD131_0994
Enzymes [BR:
rsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RSKD131_0994
DNA repair and recombination proteins [BR:
rsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RSKD131_0994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACM00854
UniProt:
B9KRR2
LinkDB
All DBs
Position
1:complement(1000707..1003340)
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AA seq
877 aa
AA seq
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MSRQEPPMPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWD
FRLEWNGVLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDR
GTWEPQGDFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDVHESAQ
TEELVERHMTSVATGRTMEQIAAGKAPPRRTRKAALPAFRPLQLARLVSAAPEGEDWIHE
TKFDGYRCLAALAGGRARLYTRSGLDWTAKFGALVEDIEALEAQEALIDGEVIAPGREGG
SFSELQARLKSGGQLLFMAFDLLALDGEDLTGQPLLARKERLETLIGKGRGAVRFSGHIR
GHGPEVHERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCTHRQEFVICGWNASDKPGRP
FASLVMGSYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQGACPFGRTPAKAKGAHWLK
PELVAEVSFTELTAEGHIRHGVFAGLRSDKDAREVRLEKPAPEKPAPRPRKARAGKKGTK
TARPDAPSPDEPAPEPARKHRKSGGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTK
REVAEHAEALAPRMLRFLKDRPVSLLRCPDGAAGECFFQKHRTRGMPVAMKTVPVETKSG
LEDFITLPDVAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDESLDFAHVRTAAA
ELRGLLTDLGLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTAT
MAKAGRKGRIFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSI
RDRLDRPCPLAEASARPATLGRTVIGRLERLVAGGKP
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcaggagccgccgatgcccgccaacccgcgacaggatctcgaccgctaccgc
gccaagcgcgacttcgcgcgcacgcccgagccgcagggccgttccgaggcgccgcgcccc
gaggcggagagcctgtccttcgtcgtgcagaaacatgcagcctcccggctgcactgggat
ttccggctggaatggaacggtgtcctgctgagctgggccgtgacgcgcggcccctcgccc
gatccgtccgcccgcaggcttgcggtgcgaaccgaggatcatccgctggattatgccgag
ttcgagggaacgatccccaagggcgaatatggcggcggcacggtcatgctctgggaccgg
ggcacctgggaaccgcagggcgactttgcggaggggctgcggaccggtcagctcaagatc
cgcctcgcgggcgagcggatgcgcggccgctggacgctggtgcgcatgaaacccaggccg
cgcgagaaggccgagaactggcttctcatcaaggagcacgacgtgcacgagagcgcgcaa
accgaggagctggtcgagcggcacatgacctctgtcgcaacggggcggaccatggagcag
atcgccgccggcaaggcgccaccgcggcgcacgcgcaaggctgccctgcccgccttccgg
ccgctccagctcgcgcgtctcgtttcggcggcgcccgagggagaggactggatccacgag
accaagttcgacggctaccgctgcctcgcggccctcgcgggaggccgagcccgcctctac
acccgctccggcctcgactggacggccaagttcggcgccctcgtcgaggatatcgaggcg
cttgaggcccaggaggcgctgatcgacggcgaagtgatcgcgccgggccgggagggcggc
tccttttcggagctgcaggcacggctgaaatcggggggccagctcctcttcatggccttc
gaccttctggccctcgacggcgaggacctgaccggacagccccttctcgcgcggaaggag
cggctggagacgctgatcggcaaggggcgcggcgcggtgcgcttctcgggccacatccgc
ggccacggccccgaggtgcacgagcgcatctgtgcggcaggcctcgaagggatcgtctcg
aagcgggcctccgcgccctatgcgggcagccggaacggcgactggctgaaggtgaaatgc
acgcaccggcaggagttcgtgatctgcggctggaacgcctcggacaagccgggccgtccc
ttcgcctcgctggtgatgggcagctacgaaaagagccgtctggtctaccgcggcagtgtc
ggcagcggtttcggcgcccccctcttccgagagttgaagccgctcctcgccgagcgggca
caaggcgcctgccccttcggccgcacgccggccaaggccaagggtgcgcactggctgaag
cccgagctggtggccgaggtgagcttcaccgaactgacggcggaggggcacatccggcac
ggggtcttcgccggtcttcggagcgacaaggacgcgcgcgaggtgcggctcgagaagcct
gcgcccgaaaagcccgcgcccaggccccggaaggcgcgcgcagggaagaaggggacgaag
acggcccggccagacgccccctcacccgacgagcccgcccccgagcctgcccggaaacac
cgcaagtcgggcggggagaagaaggagacgacgatggcccgacccgacgacctgcgcgtc
gcaggcatccgcatcagccaccccgaccggcggatctacgaccggcccgccgtcacgaag
cgcgaggtggcggagcatgccgaggcactggcgccgcggatgctgcgcttcctgaaggat
cgtcccgtctcgctcctgcgctgcccggacggggcggcgggggagtgcttcttccagaag
caccgcacccgcggcatgcccgtcgcgatgaagacggtgcccgtcgagacgaaatcgggt
ctcgaggatttcatcaccctgcccgatgtcgcggctctggtcggggccacgcagatgggg
acgctcgaattccacatctggggctcgcgcaaccgcagccttcagcgaccggaccggctg
gtgttcgatctcgaccccgacgagagtctcgacttcgcccatgtgcggaccgcggcggcc
gagctgcgcggtctgctcacggacctcggcctgccctcggtgccgatgctctccggcggc
aagggggtgcatgtgatcgtgccgctgaagcccaaggccgaatgggagagcgtgaagctc
ttctcgcgggcgctcgccacccatctggctcaggaggcgcccgaccgctacacggccacg
atggccaaggccgggcgcaagggccggatcttcatcgactggctgcggaacgaccgcggc
tcgacggcgatcgctccctacagcctgcgcgcccgcccgggcgcgccggtggcgacgccg
gtcgactgggacgagctggcctcggcccggtcgggcggcgactggacgatccgctccatc
cgcgaccggctcgaccggccctgcccgctggccgaggcctccgcccggcccgcgacactg
ggtcggaccgtgatcgggcggctcgagcgacttgtggcaggagggaaaccatga
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