Ralstonia pseudosolanacearum GMI1000: RSp1374
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Entry
RSp1374 CDS
T00071
Name
(GenBank) type III effector protein (skwp2)
Organism
rso
Ralstonia pseudosolanacearum GMI1000
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAD18525
UniProt:
Q8XQB2
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Position
megaplasmid:1729130..1736581
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AA seq
2483 aa
AA seq
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MTRITHASSHDYPRSHDNQAPASSTHPRKRNRDPAHDASSSFDGLPRRTDSRRHPEHVPA
PKRQRVSVADRQETASHASAPHPQHRARTTAEAPRRQRSDREPPARQAKRARHDRSDAIR
TETGRARTAPAPAQARDRHDPSDARRRAPAAVPQRPTPEARASFRKQFARTRKLDDDESD
LLWTIASDALSHRDCGKALRLLERPAVDFMDSLACFANFVRAVSALLESAGRLGLSERAT
DQLKRKWEESSHAFYAVHHDMAIDNERFVSKLASLCNRWSQAQPAQGAGCVAVARILESL
GMRYGPGLLRNRLADTNPLLGRDMSLLINAFSKWPEDEACRVGAQLLAGVVADEQDALLS
PVQYQPQALARLVGGVSKWPDDKTCRQAAAAMAGALWQRRQELDNPEAFKPQELAMCLNG
LSKFTDAACEQAAMAVAGAVLSRKAQLLDPGTCPSQHLSMILNGLSKWPLREPARLAAVE
VAAALWHRRRDMTDTGQFNAQDVSNCLNGLSKWHGDATCRQAAVALAEALPRHRDAHNDL
PDFLPMHLASCLNGLSKWPEEASCRQAAAAVARALLWRKADLDDAERFSAQHLSNCLHGL
SKWPDEDSCRQAALAVADALVRRLGTPGGADAFTPQQVSNCINGLSKWPEEPACKLAAVA
MATALWRRRDALDDAAQFTGQGLANCLHGLSKWPTEDPCRKAALAVVGALMPRWSSVAVA
GDPFLPQLLSNCLNGLSKWPEEDSCRKAALTVAETLMRHRRALADPRQFTPQELSNCING
LSKWPEAPGCREAALAVAEALLLRRDELGDTEAFGAIGLAACLNGLSKWPGEATCRRAAL
AVAEALLLGWDTLAADGQLTPQRLANSLNGVSRWLQDAASQEVSIRIIGMLGSGGQPFGA
FTMAQLAQLANGTARFILELGHAGEADDGDAIQSDASMALAQARLRELAAHLDSRPDRLA
QAETRNVALILKALASTGLKDGLRLLAHQGLTRLAALYAETGFKPDNLEALASVAAGLLP
VARAPELKAYRADALRLLDQMQPAVDRKIRLYIDAHLAAADPRRPAAAEAPPSLQIRRDG
EAFGTRRPGLTFFLLLKAYSVVADCWKRSNVPDIPLPAHARRDALRTWVAEMLDRTRGAI
ETDLDEMSWNLIAQIEAADQVLDAVDLKLHKDLDTILAAHPPTPLNVGDVRRELRALPEV
RDMMHSDAGAAAIEVIDLAGRNLTPHRPDETRDTAASQYAFFTRLTSGRLPLLEVQLPGK
VSAFMLTRVIRRGGDLLRMDLFGGSHLKPTKVHMRSLLGASGTKGGIKRYGRIPAMRLAD
TAPDAALMKDVIRKLNPQREDWFRMQRALLEVVPRDHVVEGPIRLALLPDRLPGSPPAFA
LRTPEGAAIQLVPNDGCGFIRESLACRIPVIRQAMHSAQALEGESQRMSLLPPQATHHFP
RDQATIEEARAHLRASLRDDPELWVANPDDGTRDIKTHKLYEALAGALIMGTQGIAVPSG
DDRLHLPRDKSKVFDATGGTVLLGKPPYDKANLMPVTADRIGTCDNGDATARFLDTAFAF
QYSYTAWDETGNPPAAADDVPMLHGKGVTIVVPDKMWPQDNDAQWVWSTEDMKVHSSWTD
GRRRDRLAPRMDTVGSLRVKEIFPPGALMALPINELKKRDADCDGDKVFLYAGLPRMTQA
VTRFFEERERRIGKLGSFKPPKTAHGVLDAEGRYQAGRAAEVLSALHGQELVGRLSTLQF
LFFGQPPALQQTLAERTLFGVYEGTERELRRGVRALLRGERATTPQVMEDLLLRAGLGVQ
HACHPVALEVARALEAQLLEVMREAQPPVRAVSPDTASRAPQALSGGSTLLFAPLTQAYE
SATTPRERLAALVTHYPRARLPHPATILPTTPPKQPDPLAQPAPLDDAPIGQSGYVPGAP
LETLHNLLTLGVKIGTDAPKAVTQTDLFLDIADHLEGTLRSSPERIRFMPYTRSGVMQEL
SQGRFNAQATLQRLRDNPTLAAGLMEMAIEELLAHGAIEGTPPLRTTPAETEAQLRHCAR
TLHAAARLVEPEITPVIKAAIEGIGALRGQAHRVKTERALHDKLRVLLHRGHPSPADAAA
MVNDALRYSVVLKPDDFAAGYAEVLGNLDRAGLIKTRVHNAFKPAWDPFKGINVKFMGRD
AAGQSVRLEVQFHTDETFALKMRYHDNYKQDFELQMQGASVEQRVACLEEARQACRQVAT
PAGCEHIGDWNNEPPQVNKRRAQAKAAQLPGAGAGKRPDAMATQVERLLQAAVRIEREVG
PLLQTMQLHVIREHSVVKKAKSIEKKIQRLCVLNGITPEQAADRVRDAMRWIIQLPHETF
GAHAQKALETLTANGLRITRVNNSFMARNRTYAGLNVKLQTREALNFEIQFHTGDSLYTR
NKTHKIYRQWQDTDVEQRQATDPAQRQALQKANADRLAALKTYAATVPTPIGAERIPSFD
RYRRDGASASDRARAERTAAPES
NT seq
7452 nt
NT seq
+upstream
nt +downstream
nt
gtgacacgtattacccacgcttcatcgcacgactacccgcggtcgcatgacaaccaggcg
cccgcatcatcgacccacccccgcaagcgcaaccgagacccggcacacgacgcgtcatcg
tcattcgatggcctgccgcgccgcacggacagccgccgccacccggagcacgtgcccgcg
cccaagcgccagcgcgtatccgtggcggaccggcaggagacggcgagccatgcgagtgcg
ccgcatccgcaacaccgagcgcgaacgacggccgaagcgcccaggcggcaacgctccgat
cgggagccgccggcccggcaggccaagcgtgcgcgccatgaccgcagcgatgccatccgg
accgaaaccggacgggctcggacggcgcccgcccccgcgcaggcacgcgatcggcacgac
ccgtccgatgcgcgccgccgcgcgccggctgccgtgccgcaaaggcccacgcccgaagcg
cgagcgagcttccggaagcagttcgcccgcacgcggaagctggacgacgacgagagcgat
ctgctgtggaccatcgcgagcgatgccctttcgcatcgcgactgcggcaaggccctgcgc
ctgctggaaaggcccgcggtcgacttcatggacagcctggcctgcttcgccaatttcgtg
agggcggtctcggcgctgctggagtctgccggcaggctcgggctgtccgaacgcgccacc
gaccagctgaaaaggaagtgggaagagtcgtcgcacgcgttctatgccgttcaccacgac
atggcgatcgacaacgaacgctttgtcagcaagctcgccagcctgtgcaaccgctggtcg
caagcgcagcccgcgcagggtgccggctgcgtggcggtggcgcggatcctcgagagcctc
ggcatgcgttacgggcccggtcttctccgcaaccggctcgcagacaccaacccgctgctc
ggacgggacatgagcctgctgatcaatgccttcagcaagtggccggaggacgaggcctgc
cgggtgggcgcgcaactgctggcaggcgtcgtcgccgacgagcaggacgcgctgctctcg
ccggtgcagtatcagccgcaggcgctcgcgcgcctcgtcggcggcgtgagcaaatggccg
gatgacaagacctgccggcaagcggcggcggcgatggccggggccctgtggcagcgccgc
caggagctggacaacccggaggcgttcaagccgcaggaattggccatgtgcctcaacggc
ttgagcaagttcaccgacgccgcatgcgagcaggcggccatggccgtggccggcgccgta
ctctcgcgcaaggcccagttgctggatcccgggacatgcccttcccagcatctgtccatg
atcctcaacggcctgagcaagtggccgctgcgggagccggcacggctggcggcggtggag
gtggcggcggcgctgtggcatcgccgccgggacatgaccgacaccggacagttcaacgcc
caggacgtgtccaactgcctcaacggcctgagcaaatggcatggcgatgcaacctgccgg
caggcggccgtcgcgctggcggaggccctgccgcggcaccgggacgcgcacaacgatctg
ccggacttcctgccgatgcacctggcgagctgcctcaacggcttgagcaagtggcctgaa
gaggcgagctgccggcaggcagcggcagccgtggcccgggcgctgctgtggcgcaaggcc
gatctggacgatgcagaacgattcagcgcccagcacctgtccaattgcctccacggcctg
agcaagtggcccgacgaggacagctgccggcaagcggcgctggcggtggcggacgcactg
gtgcggcgcctgggcacgccgggcggcgccgatgccttcacgccccagcaggtgtccaac
tgcatcaacggcctgagcaagtggccggaagaacccgcctgcaagctggcggcggtggcg
atggccaccgcgctgtggcggcgccgggacgcactggacgatgccgcgcaattcaccggc
cagggcctggccaactgcctccacggcctgagcaagtggcccacggaagacccctgccgg
aaagcggcgctggcggtggtgggcgcactgatgccgcgctggagcagcgtggcggttgcc
ggcgatccattcctgccccagctcctgtccaactgcctcaacggcctgagcaaatggccc
gaagaggacagttgccggaaagcggcgctgacggtggccgaaaccctgatgcggcaccgg
cgcgcgctggccgaccctcggcagttcacgccgcaggagctgtccaactgcatcaatggc
ctgagcaagtggcccgaagcacccggttgccgggaggccgcgctggcggtggccgaagcg
ctgctgctacgccgggacgagctgggcgataccgaggcgttcggcgcgatcggcctggcc
gcctgcctcaacggcctgagcaagtggcccggagaggcgacctgccggagggccgcgctg
gccgtggccgaagcgctgctgctgggctgggacacgctggccgccgacggccagctcacg
ccccagcgcctggccaacagcctgaacggcgtgagccggtggctgcaggatgcggcgagc
caggaggtgtccatccggatcatcggcatgcttggcagcggcgggcagccgttcggcgcc
ttcaccatggcccagctcgcccaactggccaacggcacggcccgcttcatcctggagctg
gggcatgccggcgaggccgacgacggcgacgcgatccagagcgatgcctccatggcgctg
gcccaggcccgcctgcgcgagctggcggcgcatctggactcgcgccccgacaggctggcg
caggccgagacgcgcaacgtggcgctgatcctcaaggccctggccagcaccgggctcaag
gacgggctgcggctgctcgcccatcaggggctgacgcgcctggccgcgctctacgcagaa
accggattcaaacccgacaacctggaggcgctggccagcgtggcggccgggctgctgccg
gtggcgcgcgcgcccgaactcaaggcctatcgcgcggatgccctgcggctgctcgatcag
atgcagcccgccgtggaccgcaagatacggctctacatcgatgcccacctggccgccgcc
gacccgcgccggccggcagcggccgaagcgcccccgtccctgcagatccggcgggacggc
gaggccttcggcacccgccgccccggcctgaccttcttcctgctgctcaaggcctactcg
gtggtggcggattgctggaagcgcagcaacgtgccggacatccccttgcccgcgcatgcc
cggcgcgatgcgctcaggacctgggtggccgagatgctggaccgcacgcgcggcgcgatc
gaaaccgacctcgatgaaatgagctggaacctcatcgcgcagatcgaggccgcagaccag
gtgctcgacgccgtagacctgaagctgcacaaggatctcgacacgatcctggccgcgcat
ccgccgacgccgctgaacgtgggcgacgtgcggcgcgaactgcgcgcgctgccggaggtg
cgcgacatgatgcacagcgatgcgggcgcggcggcgatcgaggtcatcgacctggccgga
cgcaacctcaccccccatcggcccgacgaaacccgggacaccgccgcatcccagtacgcc
ttcttcacgcgcctgaccagcgggcggctgccgctgctggaagtgcaattgcccggcaag
gtcagcgcattcatgctgacgcgcgtcatccggcgcggcggcgatctgctgcgcatggac
ctgttcgggggcagccacctgaagccgaccaaggtgcacatgcgcagcctgctgggcgcc
tcgggaacgaagggcgggatcaagcgctacggcaggattcccgccatgcggctggccgac
accgcgcccgatgccgcgctgatgaaggacgtgatccgcaagctcaatccgcagcgcgaa
gactggttccggatgcagcgcgcgctgctggaggtggtgccgcgcgaccatgtggtcgag
ggccccatccgcctggcgctgctgcccgaccggctgcccggctcgccgccggcctttgcg
ctacgcacgcccgaaggggccgccatccagctggtgcccaacgacggctgcggcttcatc
cgcgaatccctggcgtgcaggatccccgtcatccggcaggcgatgcactccgcgcaggcg
ctggagggcgaatcgcagcggatgtcgctgctgccgccgcaggcgacccaccatttcccg
cgcgaccaggcaacgatcgaagaggcccgggcgcacctgcgcgcgtcgctgcgcgacgat
ccggagctctgggtggccaatcccgacgacggcacgcgcgacatcaagacacacaagctc
tacgaggcgctggcgggcgcgctcatcatgggcacgcagggcatcgccgtgccttcggga
gacgaccggctgcacctgcccagggacaagagcaaggtgttcgatgccacgggcggcacc
gtgctcctgggcaagcccccttacgacaaggccaacctcatgccggtcacggccgaccgc
atcggcacctgcgacaacggcgacgccacggcccggttcctggacaccgccttcgcgttc
cagtacagctacaccgcctgggacgagaccggcaacccgccggccgccgccgacgacgtc
ccgatgctgcacggcaagggcgtgaccatcgtggtgcccgacaagatgtggccccaggac
aacgacgcgcaatgggtctggtcgacggaagacatgaaggtgcattcgagctggacggac
ggccgccgccgcgaccggcttgcaccgcgcatggacaccgtgggcagcctgcgcgtcaag
gagatcttcccgcccggcgccctgatggccctgccgatcaacgagctcaagaagcgcgat
gccgattgcgacggcgacaaggtgttcctgtacgcgggcctgccgcggatgacgcaggcc
gtaacccggttcttcgaggagcgcgagcggcgcatcggcaagctcggctcgttcaaaccg
ccgaagacggcccacggcgtgctggatgccgagggccgctatcaggccgggcgtgccgcc
gaggtgctgtcggcgctgcacgggcaggagctggtcggccgcctcagcacgttgcagttc
ctgttcttcggccagcctccggcgctgcagcaaaccttggccgagcggacgctgttcggc
gtctatgagggcaccgagcgcgagctgcggcgcggcgttcgcgcgctgctgcgcggcgag
cgggcgaccacgccgcaggtcatggaggacttgctgctccgcgcgggcctgggcgtccag
catgcctgccatccggtggcgctcgaagtggcgcgggcgctggaggcgcaactcctggag
gtcatgcgcgaggcgcagccccccgtgcgcgccgtgtcgcccgacacggcgtcacgagcg
ccccaggccctgtccggcgggtcgaccctgctgtttgctccgctcacacaggcctatgaa
tcagccacgacgccgcgcgagcgcctcgcggccctggtgacgcactacccccgggcccgc
ctgccgcacccggccacgatcctgcccaccacgccccccaagcaaccggacccactggcc
cagccggccccgctggacgacgcgcccatcgggcagtccggctacgtaccgggcgcgccc
ctggaaaccctgcacaacctgctcacgctcggcgtgaaaatcggcaccgacgcccccaag
gccgtgacgcagaccgatctgttcctcgacatcgccgatcatctcgagggaacgctgcgc
agcagccccgagcgcatccggttcatgccgtacaccaggagcggcgtgatgcaggagctg
agtcaggggcgcttcaacgcgcaggccactctgcagcggctgcgcgacaaccccaccctc
gcggccggactcatggagatggcgatcgaggagctgctcgcgcacggtgcgatcgagggc
acgccgcccttgcgcaccacgcccgcggaaaccgaagcccaactccggcattgcgcccgc
acgctgcacgcggcggcccgcctggtcgagccggagatcacgccggtcatcaaagcggcc
atcgaaggcatcggcgccctgcgcggccaggcgcaccgcgtcaagacggagcgcgccctg
cacgacaagctgcgcgtgctgctgcacaggggccacccgagccccgcagacgcggcggcc
atggtgaacgacgcgctgcgctatagcgtcgtgctcaagcccgacgacttcgccgcgggg
tatgccgaggtcctgggcaacctcgaccgcgccggcctgatcaagacgcgcgtgcacaac
gccttcaaacccgcctgggacccgttcaagggcatcaacgtgaaattcatgggccgcgac
gccgcgggccagagcgtgcgcctcgaagtgcagttccataccgacgagaccttcgcgctc
aagatgcgctaccacgacaactacaagcaggatttcgagctgcagatgcagggcgccagc
gtcgagcagcgggttgcctgcctggaggaggcccgacaggcctgcagacaagtcgccacg
ccggcgggctgcgaacacatcggcgactggaacaacgagcccccgcaggtgaacaagcgg
cgcgcgcaggccaaggcggcgcagttgccgggcgccggcgccgggaagcgccccgacgcc
atggcaacgcaggtcgaacggctgctacaggcagcggtccgcatcgagcgcgaggtgggg
ccactgcttcagacgatgcagttgcacgtgatccgggagcacagcgtcgtgaagaaagcg
aagtccatcgaaaagaaaatccagcgcctgtgcgtcctgaacggcatcacgccggagcag
gcggccgaccgcgtgcgcgacgcgatgcgctggatcatccagctgccccacgagacattc
ggcgcgcacgcccagaaggcgctggagacgctgacggccaacggcctgcggatcacgcgc
gtgaacaacagctttatggccagaaaccgcacctatgccggattgaacgtgaagctgcag
acccgcgaggcgctgaacttcgaaatccagttccacacgggcgacagcctctacaccagg
aacaagacgcacaagatctaccggcaatggcaggacacggacgtggaacagcgacaagcc
accgacccggcccagcggcaggcactgcaaaaggccaatgccgaccggctcgcggcgctc
aagacctatgctgccaccgtgccgacgcccatcggcgcggagcgcattccgtcattcgac
cgctaccggcgggacggcgcgtcggcaagcgatcgggctcgggccgagcgcaccgcagcg
ccagaatcgtag
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integrated database retrieval system
