Cereibacter sphaeroides 2.4.1: RSP_2679
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Entry
RSP_2679 CDS
T00284
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RSP_2679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsp03400
]
RSP_2679
Enzymes [BR:
rsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RSP_2679
DNA repair and recombination proteins [BR:
rsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RSP_2679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABA78834
UniProt:
Q3J300
LinkDB
All DBs
Position
1:complement(1323163..1325769)
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AA seq
868 aa
AA seq
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MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWDFRLEWNG
VLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDRGTWEPQG
DFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDTHESEQTEELVER
HMTSVATGRTMEQIAAGKAPPRRTRQAALPAFRPLQLARLVSAAPEGEDWIHETKFDGYR
CLAALAGGRARLYTRSGLDWTAKFGALVEDVEALEAQEALIDGEVIAPGREGGSFSELQA
RLKSGGQLLFMTFDLLLLDGEDLTGQPLLARKERLKTLIGKGRGAVRFSGHIRGHGPEVH
ERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFVICGWNASDKPGRPFASLVMG
SYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQSACPFDRTPAEAKGAHWLKPELVAEV
SFTELTAEGHIRHGVFAGLRSDKDAREVRLEEPAPETPAPRKSGVRKKGTKTARPDAPSP
DEPAPEPARKPRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTKREVAEHAEA
LAPRMLRFLKDRPVSLLRCPEGAAAECFFQKHRTRGMPVAMKTVPVETKSGPEDFITLPD
VAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEGLDFAHVRTAAAELRGLLTDL
GLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTATMAKAGRKGR
IFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCP
LAEASARPATLGRTVIGRLERLVAGGKP
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccaacccgcgacaggatctcgaccgctaccgcgccaagcgcgacttcgcgcgc
acgcccgagccgcagggccgttccgaggcgccgcgccccgaggcggagagcctgtccttc
gtcgtgcagaaacatgcagcctcccgtctgcactgggatttccggctggagtggaacggt
gtcctgctgagctgggccgtgacgcgcggcccctcgcccgatccgtccgcccgcaggctt
gcggtgcgaaccgaggatcatccgctggattatgccgagttcgagggcacgatccccaag
ggcgaatatggcggcggcacggtcatgctctgggaccggggcacttgggaaccgcagggc
gactttgcggaggggctgcgcaccggtcagctcaagatccgcctcgcgggcgagcggatg
cgcggccgctggacgctggtgcgcatgaaacccaggccgcgcgagaaggccgagaactgg
ctcctcatcaaggagcacgacacgcatgaaagcgagcagaccgaggagctggtcgagcgg
cacatgacctcggtcgcaacggggcggaccatggagcagatcgccgccggcaaggcgcca
ccgcggcgcacgcgccaggctgccctgcccgccttccggccgctccagctcgcgcgcctc
gtttcggcggcgcccgagggcgaggactggatccacgagaccaagttcgacggctaccgc
tgcctcgcggccctcgccggaggtcgggcccgcctctacacccgctccggcctcgactgg
acggccaagttcggcgccctcgtcgaggatgtcgaggcgcttgaggcccaggaggcgctg
atcgacggcgaggtgatcgcgccgggccgggagggcggctcgttctccgagctgcaggca
cggctgaaatcggggggccagctcctcttcatgaccttcgacctgctgctcctcgacggc
gaggacctgaccggacagccgcttctcgcgcggaaggagcggctcaagacgctgatcggc
aaggggcgcggcgcggtgcgcttctcgggccacatccgcggccacggccccgaggtgcac
gagcgcatatgcgcagcgggccttgaagggatcgtctcgaagcgggcctccgcgccctat
gcgggcagccggaacggcgactggctgaaggtgaaatgcgcgcaccggcaggaattcgtg
atctgcggctggaacgcctcggacaagccgggccgtcccttcgcctcgctggtgatgggc
agctacgaaaagagccgtctggtctaccgcggcagtgtcggcagcggcttcggcgccccc
ctgttccgcgagttgaagccgcttctggccgaacgggcgcaaagcgcctgccccttcgac
cgcacgccggccgaggccaagggggcgcactggctgaagcccgagctggtggccgaggtg
agcttcaccgaactgacggcggaggggcacatccggcacggggtcttcgccggcctgcgg
agcgacaaggacgcgcgggaggtgcggctcgaggagcccgcgcccgaaacgcccgcgccc
cggaagtcgggcgtgcggaagaaggggacgaagacggcccggccagacgccccctcaccc
gacgagcccgcccccgagcctgcccggaaaccccggacggcgcgcggggagaagaaggag
acgacgatggcccgacccgacgacctgcgcgtcgcaggcatccgcatcagccaccccgac
cggcggatctacgaccggcccgccgtcacgaagcgcgaggtggcggagcatgccgaggca
ctggcgccgcggatgctgcgcttcctgaaggatcgtcccgtctcgctcctgcgttgcccg
gaaggggcggcggcggagtgcttcttccagaagcaccgcacccgcggcatgcccgtcgcg
atgaagacggtgcccgtcgagacgaaatcggggcccgaggatttcatcaccctgcccgat
gtcgcggctctggtcggggccacgcagatggggacactcgaattccacatctggggctcg
cgcaaccgcagccttcagcgaccggaccggctggtgttcgatctcgaccccgacgagggt
ctcgacttcgcccatgtgcggaccgcggcggccgagctgcgcggtctgctcacggacctc
ggcctgccctcggtgccgatgctctccggcggcaagggggtgcatgtgatcgtgccgctg
aagcccaaggccgaatgggagagcgtgaagctcttctcgcgggcgctcgccacccatctg
gctcaggaggcgcccgaccgctacacggccacgatggccaaggccgggcgcaagggccgg
atcttcatcgactggctgcggaacgaccgcggctcgacggcgatcgctccctacagcctg
cgcgcccgcccgggcgcgccggtggcgacgccggtcgactgggacgaactcgcctcggcc
cggtcgggcggcgactggacgatccgctccatccgcgaccggctcgaccggccctgcccg
ctggccgaggcctccgcccggcccgcgacactgggtcggaccgtgatcgggcggctcgag
cgacttgtggcaggagggaaaccatga
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