Rhodovulum sulfidophilum: NHU_04061
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Entry
NHU_04061 CDS
T04143
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rsu
Rhodovulum sulfidophilum
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_04061
Enzymes [BR:
rsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHU_04061
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
NHU_04061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BAQ71184
UniProt:
A0A0D6B8W6
LinkDB
All DBs
Position
complement(4180958..4184326)
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AA seq
1122 aa
AA seq
DB search
MTRNEASARQIQAADPSGSVWLSANAGSGKTRVLTDRVARLLLAGVPPQRILCLTYTKAA
AGEMQNRLFDRLGGWAMLADADLRQALHELGVETAIGEDTLREARRLFARAIEAPGGLKI
QTIHSFCAGILRRFPLEAGVSPQFVEMDDRSARRLRAELVDALAEGPEAGRFADLARFHT
DAELDALTAEIASHRDRFPATADPGAIWKSFGLSADEDSAVLLRGVFTGAEEGLLSRLKS
ALTGGGKTDQTAAAKLGALNLGGADRALLLGLEDILLTGSGAKQPFSAKTGSFPTKAVRA
ALGPDLAPLEDLMVRVETARPRRLALDAAERTLALHRFAEAFLPAYAARKQLQGWLDFDD
LILKARDLLTDPGVAQWVLFRLDGGLDHILVDEAQDTSPVQWQVIELLAQEFTAGEGARS
GVDRTIFVVGDKKQSIYSFQGADPEGFDRMRALFRDRLENVDRGLLNLTLEYSFRSSEAI
LGAVDRTFPEGARAGLDREMRHRAFHADLPGRVDIWPVVEDSEAADPGHWADPVDMLGAS
HHSVRLARQVASEIRAMIDRGETIAVKDGGRRPIHEGDILILVQSRTDLFHEIIRACKAE
RLEVAGADRLKIGGELAVRDLTALLSFLALPEDDLSLASALRSPLFGWSEDALFRLAAPR
KGYLWQALRHADQAGTETVPMLQALLDEADFLRPYDLLERILTRHDGRRRLVARLGQEAE
DGIDALLTQALAYETTEVPSLTGFLAWLSSGEVEIKRQLDAAGRRIRVMTVHGAKGLEAP
VVILPHTAQRTVTIRDQIYTLEDGLPAWKTGSDARPEALAAAHAARVQREEEERSRLLYV
AMTRAEQWLIVAAAGKLAKDGSDWYSRIRRGTEALGPVPRDFGFGEGLRYQRGLWPEDRV
LAAPETAPPETALPDWALRDAPRPERPPQPLSPSDLGGAKALPGDPLAPAEAEDVRARGT
WMHLLLEHLPGTDPADRPALAHALLTAADPPAPEAAIPALAAEAEALMARPDLAPVFAPG
SLAEVPLIAALGQGRLSGTVDRLIVSPTRITAVDFKTNAVVPDRPEDTPEGILRQLGAYA
MALAQIYPGHEIDTAILWTRTGALMTIPRELGHAALARAGLA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgacccggaacgaggcaagtgcgcgccagatccaggccgccgatccgtcgggctcggtc
tggctgtcggccaatgcgggctctggcaagacccgggttctgaccgaccgggtggcgcgg
cttctgctggcgggggtgccgccgcagcgcatcctgtgcctgacctataccaaggccgcc
gccggagagatgcagaaccggctgttcgaccggctgggcggctgggcgatgctggccgat
gccgatctgcggcaggcgctgcacgagctgggcgtcgagaccgccatcggcgaggacacc
ctgcgcgaggcaagacgcctgttcgcgcgcgccatcgaggcgccgggcgggctgaagatc
cagaccatccattccttctgcgcggggatcctgaggcggtttccgctcgaggccggggtc
tcgccgcaattcgtcgagatggatgaccgcagcgcccgccgtctgcgggccgagctggtc
gatgcgctggccgagggtcctgaggccgggcgctttgccgatctggcccggtttcacacc
gatgccgagctcgatgcgctgaccgccgagatcgccagccatcgcgaccggtttccggcc
accgccgacccgggcgcgatctggaaaagcttcggcctttccgccgatgaggacagcgcg
gtcttgctgcgcggcgtattcaccggggccgaagaggggctgctgagcagactgaaatcc
gcgctgaccgggggcggcaagaccgatcagaccgccgccgccaagcttggcgcgctgaat
ctcggcggggccgaccgggccctgctgctggggcttgaagatatcctgctgaccggctca
ggcgccaaacagccgttttcggccaagacagggtcttttcccaccaaggcggtccgggcc
gcgctgggacccgatctggcgccgctggaagacctgatggtccgggtcgagaccgcgcgg
ccccggcggctggctctggatgcggccgagcggacgctggccctgcaccgctttgccgaa
gccttcctgcccgcctatgcggcgcgcaaacagctgcagggctggctcgatttcgacgac
ctgatcctgaaggcgcgcgatctgctgaccgatccgggcgtcgcgcaatgggtgctgttc
cggctcgatggcgggctcgaccacatccttgtcgacgaggcacaggacaccagcccggtt
caatggcaggtgatcgagcttctggcgcaggaattcaccgcgggcgagggcgcgcggagc
ggggtcgaccgcacgatcttcgtcgtcggcgacaagaagcagtcgatctattccttccag
ggcgccgatcccgagggcttcgaccggatgcgcgcgctgttccgcgaccggctggaaaat
gtcgaccgcggcctgttgaacctgacgctggaatattcgttccgctcctccgaggcgatc
ctcggcgccgtcgaccggaccttccccgaaggcgcgcgggcggggctcgaccgcgagatg
cggcaccgagccttccatgccgatctgcccggccgggtcgatatctggcccgtggtcgag
gatagcgaggccgccgatccggggcattgggccgatccggtcgacatgctgggcgcctcg
catcacagcgtgcggctggcgcgtcaggtggcctcggaaatccgcgccatgatcgaccgg
ggcgagaccatcgccgtcaaggacggggggcgccgcccgatccatgagggcgacatcctg
atcctggtgcaaagccggaccgatctgtttcacgagatcatccgcgcctgcaaggccgag
cggctggaggtggcgggcgccgaccggctgaagatcggcggcgagcttgcggtgcgcgac
ctgaccgcgcttctgtccttcctggcgctgcccgaggacgacctgtcgctggcctcggcc
ctgcgctcgcccctgttcggctggagcgaggatgccctgttccggctggcagcaccccgc
aagggctatctctggcaggcgctcagacacgcggatcaggccggaacagagacggttccg
atgctgcaggcgctgctggacgaggccgatttcctgcgcccctacgatctgctggaacgc
atcctcacccgccatgacgggcgccgcaggctggtggcgcggctcgggcaggaggccgag
gacggcatcgatgcgctgctgacccaggcgctggcctatgagacgaccgaggtgccctcg
ctgaccggcttcctggcctggctgtcaagtggcgaggtcgagatcaagcgccagctcgat
gcggcggggcggcggatccgggtgatgacggtgcatggcgccaaggggctagaggcgccg
gtggtgatcctgccgcatacggcgcagcgcactgtcaccatccgcgaccagatctatacg
ctggaagacggcctgcctgcctggaagaccggatcggatgcgcgccccgaggccctggcg
gccgcccatgccgcgcgggtgcagcgcgaggaggaggaacggtcgcggctgttatacgtc
gccatgacccgggctgagcaatggctgatcgtggccgcggccggaaaactcgccaaggat
ggcagcgactggtacagccgcattcgccgcggcaccgaggcgcttggccccgtgccgcgc
gatttcggtttcggcgaggggctgcgctatcagcgcgggctgtggccggaagaccgcgtc
ctggccgcgcccgagacggcgccgcccgaaaccgcgcttcccgactgggcgctgcgcgac
gcgccccgcccggaacggccgccgcagccgctgtcgccatccgatctgggcggcgccaag
gccctgcccggcgacccgcttgcccccgccgaggccgaggatgtccgggcccggggcaca
tggatgcaccttctgctggaacatcttccgggcaccgatccggccgaccggccggcgctg
gcccacgcgttattgaccgcggccgacccgcccgcgcccgaggccgcgatcccggccctt
gccgccgaggccgaggcgctgatggcgcggcccgatctggccccggtcttcgcccccggc
agcctggccgaggttccgctgatcgcggccctgggccagggacggctgagcggcacggtc
gaccggctgatcgtctcgcccacccggatcacggccgtcgacttcaagaccaacgcggtc
gtgccggaccggcccgaagacacgcccgagggcatcctgcgccagctgggcgcctatgcc
atggcgctggcgcagatctatcccggccacgagatcgacaccgccattctctggacccgg
accggcgctttgatgacgatcccgcgagagctgggccacgccgcgcttgcccgggccggg
ctggcttga
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