Rhizoctonia solani: RhiXN_03117
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Entry
RhiXN_03117 CDS
T09256
Name
(RefSeq) Retrotransposable element Tf2 protein
Organism
rsx
Rhizoctonia solani
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
Integrase_H2C2
Chromo
Retrotrans_gag
rve
Ty3_capsid
RVP_2
Asp_protease_2
gag-asp_proteas
zf-H2C2
Motif
Other DBs
NCBI-GeneID:
67025397
NCBI-ProteinID:
XP_043178430
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Position
3:complement(join(2215660..2219011,2219098..2220446))
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AA seq
1566 aa
AA seq
DB search
MATRSRTASRAQSPFDSGHLEPQLPPTSSVEYGEVSLERVTRLLLGLLGQVERLEREIAE
IKEAGIETRTNVENISQTVDIVKDGLKSLQLQGPRTPEGNQPKAVEETPRPIPKTKPIGS
VSRGPFWSEPTREIPGLAQPTPRRAAPLRVPSPPPSPHLQSPIGAPAPPPPAPVAAYPAP
VKVDHPDAYTGKIGSEAKQWLTRMLAWTRLNSRMFPTDQEVLSFLLMNMKDSAGAWAHPH
LDQLGSHRAIIQTVEGFKMEFLAAFGDPDATRAAERKITLLTQSGTCADYITKFRTLAME
LDWNDAALRGQFARGLHWEVSRQIATREHRPRTLLELQNAALVIDNALREERASHPPRDN
KSSKQPHPARGTSTGQSSTGSKKLSDDPNFVSEEERNRRRAAGACIKCGKMGHKFAECRT
GWKATPTEDKGKAKETAKIGEDSKYQLGKEISPLFTISIKPEKQADHLEVLIDSGATSSF
LHPRTAELLRLPLIDLPQPRTVTMLDGSSPQAGKIWKKAHLTFLFDGKRMTETFLICNTG
SHAAILGIKWLENHNPKIDWNSRTLSFPHTPPEHIAIAEEEEADKTPLEGVPSKYHQYAK
VFGEEEFNKLPPHRHYNIGIELTEEGPLNSPLYSMTDAKSATLKDWLRDELKAGKIRPSK
SPISSPVMFVPKKDGSRQLVVDYRRLNNQTKKNIYPLPRPDDLMAQLCGAKVFTKLDLRW
GYNNVRVKEGDKWKTAFRTKYGLYESLVMTFGLTNAPAAFQHFMNKLFKDLLDVCVIIYL
DDILIYSKDDATHTQHVHEVLRRLMENQLFCKASKCTFHVTSVEYLGIIVLDKGFSLDKL
KIQAVREWPTPTKVKEVQSFLGFANFLRRFVANFSHIARPLHNLVKKDTPWKWETREQEA
FQNLKDAITSAPVLCHADPAKPYFLETDASGAALGSILSQRQEDGRLHPLGFLSESFKGA
EQNYDTHDKELLAIIRSFEYWRIFLEGTAHPITVFTDHRNLEYWKESRTFNRRHARWHLL
LAGYNFQIVYRPGKQSGKPDALSRRADHADIPPADQTMLPDPVFANVALVLPEKELQRRI
ESSLDQDKSLEEILQFLQNESKAPPSIKRAFKDYEMEAGLLFYQGRIVVPDVGTLRTDLL
NIFHDSPLAGHPGRQRTLELVSRTYYWPGIRADTYWHVDSCETCQRIRKPKYALIPPQPL
ELPSRPWQHVSYDMIVDLPKDGNCDSILVIVDSFTKYVILVECSKKLKAPELADLFLRHV
WKRYGMPEKTISDRRRVFNNKFLKALYQRLGIDPHFSSAYHPQSNGQTERVNPTVEHFLR
AYSGVNQKDWVKWLPMAEFAYNNAVHSSTGKSPFKALYGWEPSLTPSNVPTDVPEADNLA
TQMEEQWREIEAALRQSKTRMVAGEAGKPLEFEIGEEAWLDAKNVKLKTLSPKLTEQRLG
PFKVTEKISDRAYRLELPPTMRIHNVFYVGLLSKVKRDKKRTFENRPPPVTVDGEEEYEV
EGITDMEERNGKWFFRVKWKGYGPEDNTWEPRENLKNAGKILKKYKEEMRKKALGAAKAL
RGGAVS
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atggcaacccgttcccggacggcctctcgagcccaatcccctttcgattcgggacacctg
gaaccccagcttccgccaacctcctctgtcgaatatggcgaggtctcccttgaacgagtc
acccgactcctccttggcctactcggccaagttgagcgcctcgagcgagaaatcgctgag
atcaaggaagcagggattgagacccggacaaacgtcgaaaatatctcacaaaccgtcgat
attgtcaaggatggtctcaagtccctccagctccaaggcccccgtaccccagaagggaac
caacccaaggcagtggaagaaacgccacgccccataccaaaaaccaagcctattggatcg
gttagtaggggacccttctggtcagaaccaactagggaaatcccaggtctcgcccagcct
accccaagaagagccgcacccctgcgagtcccgtctccccctccatctccgcatctccaa
tcccccatcggagcacctgcccctcctccaccggctccagtcgccgcatatcctgccccg
gtcaaagtagaccacccagacgcctatacaggcaagatcgggagtgaggccaaacagtgg
ctcacaaggatgttggcctggacccggctaaactcgcgcatgtttcccacggaccaagaa
gtcctatccttccttctgatgaatatgaaggattccgcgggagcatgggcacacccacac
cttgaccagcttggatcacaccgggcaatcatccaaacggttgagggattcaaaatggag
tttttggcagcattcggtgaccctgatgccacaagggccgccgagcggaagatcaccttg
cttacccagtccggcacatgcgcggattatatcacaaagttcagaaccctggcaatggaa
ctggactggaacgacgcggccctccgaggccagtttgcccgcggcctccactgggaggtc
agccgccaaattgctacccgcgaacatcgcccccgaacactcctcgagctgcaaaacgca
gcactcgttattgacaacgctctccgagaagagcgtgctagccacccgccgagggataat
aagtctagcaagcaaccccaccccgcaaggggaacaagtaccggccaatcaagtaccggt
tcgaagaaactctccgacgaccccaatttcgtgtcggaggaggaaaggaatcgccgccgc
gccgctggcgcctgcatcaagtgcggcaaaatgggccacaagttcgcggaatgccgcacg
ggctggaaggctacccctactgaggacaaagggaaagccaaggaaaccgccaagattggc
gaagactccaagtaccaattgggaaaagaaatctcccccctcttcactatttccatcaaa
ccagagaaacaagcggatcacttagaagtcctgatagactcaggcgccacctcatccttc
ttacacccccgtacagcggaactactccgcctccctctaatagacctcccacaaccccgt
actgttactatgctcgatgggtcgagcccccaggctggaaagatttggaagaaggcccac
ctaaccttcctatttgatggcaaacgcatgacggaaaccttcctgatttgcaatactgga
tcacacgctgccatcctaggaattaaatggttagagaatcataatcccaaaatcgattgg
aactcgcgcaccctctcattccctcacacgcccccggaacacatagccattgctgaagaa
gaggaagctgacaagacaccccttgaaggagtaccctccaagtaccatcaatatgcaaag
gtatttggggaagaagaattcaataaacttccccctcatagacactacaatatcggcatt
gaacttacggaagaaggacccctgaactcccccctttatagcatgactgatgccaaatcc
gctacactcaaggactggctcagggacgagctcaaggctgggaaaatccgacccagtaaa
tcaccaatcagctccccggttatgttcgtgcccaaaaaggatggttcccgtcaacttgta
gtagactatcgtcgtctgaacaaccagacaaagaagaacatttacccgctaccccgtcca
gatgacctcatggcccagctttgcggtgccaaggtcttcaccaagctagacctaagatgg
ggttacaataacgtccgtgttaaagaaggtgacaaatggaaaacggctttccgcaccaaa
tatggcctatacgaatccctggttatgacctttggcttgactaatgctcctgcggccttc
caacacttcatgaacaaactgttcaaggatttattggatgtatgcgtcatcatctacctt
gatgatatcctaatctactcaaaggatgacgcaacccatacccaacacgtccatgaagtc
ctacgacgcttaatggagaaccaattgttctgtaaggcatccaagtgtacattccacgtc
acatcagtggagtatttaggaataattgtattggataagggattcagcctggataagctc
aaaatccaggcagtccgagaatggcctacgcccaccaaagtcaaggaagtacaatcgttc
ctaggctttgccaatttcctgcgccgctttgttgccaattttagtcacatagcccggcca
ctgcacaacctagtgaagaaagatacgccatggaaatgggaaactagggaacaggaagcc
ttccaaaacctgaaggatgccatcactagtgccccggtactctgccacgctgaccctgcc
aaaccatacttcctcgaaacggatgcctccggcgcagcactgggctctatactaagccaa
cgccaagaggatggtcgcttacatcccctaggtttcttgtcagaatcattcaaaggtgct
gaacagaactacgacacccacgacaaggaacttcttgcgatcatccgctcctttgaatat
tggcgaatcttcctggaaggaacggcccaccccataacggtattcaccgatcacaggaac
ttagagtactggaaagaatcccgaaccttcaaccgtcgtcatgcaaggtggcacctttta
ctagctggctacaatttccaaatagtctatcgccctggcaagcagtccggcaaaccagat
gccctgtcccgccgcgccgaccacgccgatattccgcctgccgaccaaacaatgctgccc
gaccccgtctttgccaacgtggcactagttctaccggaaaaagagctacaaaggcgtatc
gagtcaagcctggaccaggacaagtccctggaagagattctccaattcttacaaaacgag
tccaaggcaccaccttccatcaaacgcgcgttcaaggattatgaaatggaggctggactg
ttgttttatcagggacggatcgtagtaccggacgtagggaccttgaggacggatctgctc
aatatcttccacgatagtccgttggcgggccatccgggcagacaaaggactctagaacta
gtatccagaacttactactggcccggcatacgtgcagatacatactggcacgttgactca
tgtgaaacctgtcaacggattcggaaacccaagtacgcgttgatcccgcctcagccttta
gaactcccatcacgcccgtggcaacatgtgtcatacgacatgatagtagacctacccaaa
gacggaaactgtgattctatcctggtcattgtggatagttttactaagtacgtgatccta
gtagagtgctccaagaagctcaaagccccggaactagcagacctattcctacgccatgtg
tggaagcgttacggcatgcctgagaagacaatatcagaccgcagacgggtttttaataac
aaattcctgaaggcgctgtaccaacgcctggggatagacccccacttctcttcggcctac
catcctcaaagcaacgggcaaacggaacgcgtgaaccccacggtggaacactttttacgg
gcgtactcaggggtaaaccagaaagactgggtcaagtggctaccaatggcggaatttgcc
tacaacaacgcggtacacagctccacaggcaaatctcccttcaaggcactttacggctgg
gaaccttccttgaccccaagtaacgtcccaacggatgtccccgaggcagataatctggcc
acccaaatggaagaacaatggcgggaaatagaggcggcactccggcaatcaaagacacgc
atggtagccggagaagcaggtaaaccacttgaattcgaaattggggaagaagcctggctg
gacgccaagaatgtgaagctgaagacccttagtccaaagctaaccgaacaacgcctaggc
cccttcaaggtaaccgagaaaatctccgacagggcttaccgcttggaacttcctccaacc
atgcggatccataacgttttctatgtgggacttttatctaaagtcaagagggacaaaaag
cgcacctttgagaatcgcccccctccagtcaccgtggacggggaagaggaatacgaagtg
gaagggataacggacatggaagaacggaacgggaaatggttcttcagagtcaaatggaag
ggctacggaccagaagataacacgtgggagccccgggagaacctcaaaaatgcggggaaa
attttgaaaaaatacaaagaagaaatgagaaagaaggccctcggcgctgccaaggccctt
agagggggggcagtgtcatag
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