Rhizoctonia solani: RhiXN_12004
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Entry
RhiXN_12004 CDS
T09256
Name
(RefSeq) Retrotransposable element Tf2 protein
Organism
rsx
Rhizoctonia solani
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Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
Integrase_H2C2
Chromo
Retrotrans_gag
RVP_2
Ty3_capsid
rve
gag-asp_proteas
Asp_protease_2
zf-H2C2
zf-CCHC_3
COMP
Motif
Other DBs
NCBI-GeneID:
67034282
NCBI-ProteinID:
XP_043186580
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Position
15:complement(join(618039..621323,621485..622630))
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AA seq
1476 aa
AA seq
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MEPEPSTAALLKAITALTATVGSLQDQIKQQGQQLTELRAICKETADLLGDKDQGAPQAQ
PGPSTGPVTPPTHLGGETHTPGTVRPGLKAPFRPSRGTGFDSEDKEEPRRPKKEPQGTPR
RHLGSLTPFDAGSSVKRPKMDLPDPYKGETRGRKATQWLDRMMLWVALHRDQFDEEEQMV
VWILYHMTDKAADWALPIIGAIIKGEGNPPTTIQALTAKFKEAFADPDAKRAAARKIAAL
SQSTTTSEYVTEFRNLMAELDWNKEAYIAQFTRGLHWKVKELLSTKDSIPDELEAIFAAA
IKIDNIRRKNEENRPKKAPAKSLVTATTSTTTTQRVRLSKDPNYVTPEERDRRRASGLCV
KCGQKGHGIKQCPNGWKATVKENFPAEPLKTLVDSGATLNFISPSIVEKYKIPKTQLENP
RVVRMLDGTISQTGRIWHQVQLAVSANGHPHTIPFLVCPIGNTPAILGMTWLTAEAPLID
WQQGLITFPEQVQIASEEEADPNPLADLPPQYHEFAKVFGEEEFKVLPPHREYDISIDLV
PDAKLTPGPIYGMTDAESRALKQHIDEELATGKIRPSTSSAGAPVMFVKKADGSLRLVVD
YRKLNDVTHKNVYPLPRQDDLMAKLRHAKVFTKLDLRWGYNNVRIREGDKWKTAFRTKYG
LFEYLVMPFGLTNAPAAFQHFMNDLFRDLIDVTVVIYLDDILIFSEKPEDHPTHVREVLS
QLLKNQLFCKLSKCHFHVTTVDYLGIVISPAGFSMDQKKIEAVTSWPTPRTVKQVQAFLG
FVNYLCCFIPNFSLVARPLHNLTKKETPWSWGNQEEEAFQELKSLVTKSPVLIHSNPKLP
YYLETDASGVAMGAILSQRGSDNRLHPIAYMSKSFSGAEANYNTHDKELLAIIKALEEWR
IFLEATDKPVQVFTDHRNLEYWMQARTFNRRHARWRVFLSDFNFEIHYRPGKQSGKPDAL
SRRSDYVDLPTEPEVMLPAEVFANTLEEEVEIVTEIRSRLREDPSLEPIIQFLTEDAENA
PPSIRKAYRDYDWEEDLLWYRGKLVVPDSELLKERLLREFHNSPLAGHPGQQRTLELLSR
NYWWPGMKSSAKEWVECCPTCQVNRRAHAPVIALKPLEVPPFPFHTISYDFITGFPKSKG
YDAILLVIDSFSKFGHFIPTTKKVTAKGLADLFITHVWKLHGLPIKTVSDRGTTFTGKFL
RALYQRLGIKPAFSSAYHPESDGQTERVNQFIEFYLRSYVTADHSDWATWLPLAEYAYNN
AKHSATGKTPFELVYGRNPVMSPSNVPTNIPEADHVADTLAQEWKEAESALRMTKEKMAG
LKGITPEYSIGEKVWLDGKNVELRTNSNKLDPRRLGPFEILEKISSHAYCLKLPETLKIH
DVFYVGLLSKVHESPSQPFPERPPPETIEGEEEYKVEQIIDSKRQRGKWFYLIKWKGYGP
EDNSWEPEELLEHSQEEIQRFNKSRLKKACDSAKSL
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagagccgtccactgccgctctcctcaaggctatcacagccctcaccgccaca
gtcgggtccttgcaggaccaaatcaaacaacaaggccagcagctcactgaactcagggcc
atatgcaaggaaaccgcggacctccttggggataaagaccagggagcaccccaagcccag
cctggcccatcgactgggcctgtcactcctcccacccacttgggaggagaaacccacact
ccaggcacggttaggcctgggctcaaagcccctttccgcccctcaagagggacaggcttt
gattcagaagacaaggaagagccaaggcgccccaagaaggagcctcaaggaacgcctagg
aggcatctagggtccctaacccccttcgacgcaggatccagcgtcaaacgaccaaagatg
gatctcccagatccctacaagggagagaccaggggccggaaagccacccaatggctggac
agaatgatgctttgggttgcccttcacagggaccagttcgacgaagaagagcaaatggtt
gtatggattctataccatatgaccgacaaggccgccgactgggcactccccatcatcgga
gcaatcatcaagggcgaaggtaaccctcccactaccatccaggctttaacggccaaattt
aaagaggcctttgccgaccccgacgccaagcgggctgccgccaggaaaattgcggcactc
tcccaatccaccacaacctccgagtacgtcacggaattccgcaatctcatggcggaactg
gactggaacaaggaagcctacatcgcgcagttcacgcgaggcctccactggaaggtcaag
gagttgctatcaaccaaggatagcatccccgacgaactcgaagcaatttttgcggctgcc
ataaaaatagacaacatccgccgcaaaaatgaggagaatcgccccaaaaaagcccctgcc
aagtccttggtcaccgcgaccacttccaccaccaccacccaacgggtccgcttatccaag
gaccctaactacgtcacgccggaagaacgagaccgtcgccgcgcatctggtctttgtgtc
aagtgcgggcaaaagggacatggcatcaaacagtgccccaatggctggaaagccacagtc
aaggagaatttcccggcagaacccttaaaaacgttagtagactcaggagccacattgaac
ttcatttccccctcgattgtggaaaaatacaaaattccaaaaacccaactcgaaaaccca
cgagttgtgagaatgctagatggtactatttcacagactggtcgcatttggcaccaggtt
caactcgcggtctcggccaatggccatccccacaccattcctttccttgtttgccccata
ggcaacacaccggctatcctaggcatgacatggttaacggcagaagctcctttgattgat
tggcaacagggactaatcaccttccccgaacaagttcaaattgcctctgaagaagaagcg
gacccaaaccctttagcagacctcccccctcagtaccatgagttcgctaaagtctttggc
gaagaggaatttaaggtcctccctccacatagggagtatgacatctccatagaccttgtc
ccggacgccaaactgacccctggccccatatacggcatgacggatgcggaatctagagcg
ttgaaacaacacatcgacgaggaattggcaacaggcaaaatccgccccagcacctcatcc
gccggcgcccctgtcatgtttgtaaagaaggctgatggctcgctaagattggtagttgac
tataggaagctaaatgacgtcacgcacaagaacgtctacccgctccctaggcaggacgac
ctcatggccaaactcaggcacgccaaagtattcaccaaattagacttacgatggggatat
aataatgttcgaatcagggaaggtgacaaatggaaaacggccttcagaaccaaatatggc
ctattcgagtacctagttatgccttttggtcttaccaatgcccccgcagcgttccaacat
tttatgaacgatttgttcagggatcttatcgacgtcactgtggtcatatacctggatgat
atactgatcttctcagaaaaacccgaggaccacccaacccacgtcagggaagtcctatca
caactactgaagaaccagttgttctgcaagctgtccaaatgtcacttccacgttaccacc
gtggattatctaggaattgtcatttcccctgcaggcttctcaatggatcaaaagaagata
gaagccgtcacttcctggcccacacccagaacagtcaagcaagttcaggccttccttggt
tttgtcaactacctttgttgcttcatccccaattttagtttggtagcacggcccctgcac
aaccttacaaaaaaggaaaccccatggtcctggggtaaccaagaagaagaggcattccaa
gaactgaaatccctggtcacaaagtccccggtcctgattcattccaatcccaagctcccc
tattaccttgagacagacgcctcaggggttgccatgggagctattcttagccagcgagga
tcagataaccgactacacccaattgcgtatatgtccaaatcgttctcaggggcagaagcc
aattacaatactcacgacaaggaactcctggccatcatcaaggccttagaggaatggcgt
attttcctggaagctacggacaagccagttcaggtattcacagaccaccgcaaccttgag
tactggatgcaggcaaggacattcaaccggcggcatgctagatggcgcgtattcctgagc
gacttcaactttgaaatacattatcgcccagggaagcagtcagggaagccggatgccttg
tccagacgttcggactatgtagacctacccacggaaccagaagtcatgctacccgcggaa
gtttttgcaaacaccttggaagaggaggttgagattgtcacggaaatacggtctagactc
agagaagacccctctctggaaccaatcatccagttccttacagaagacgcggagaatgca
cccccttccattcgaaaggcttatcgggattatgactgggaagaagaccttctgtggtac
cgcggaaaattagtagtcccagactcagaactcctcaaggaacgattacttagagaattc
cacaactccccattggcgggtcacccaggacaacaaaggacgttagaactccttagccgg
aactattggtggccaggaatgaaatcatccgccaaggaatgggtggaatgctgccctacc
tgccaagttaatcgacgagctcacgcccctgtcatcgccttaaagccgttagaggttccc
cctttcccgttccacacgatatcctatgacttcatcacaggattcccaaagtctaaaggg
tacgacgcgatcttattggtcattgactccttttccaaatttggacacttcatccctacc
acaaagaaagtcacagctaaaggactggcagacctgttcatcacgcatgtctggaagctt
catgggttgccaatcaagacagtctcggaccgcggaaccaccttcactgggaaattcctg
agagccctctaccagcgccttggaatcaaacccgccttctcctcggcctaccatccagaa
tcagatggacagacggaaagggtgaaccaattcattgagttctacctcagatcttacgtc
acagcggatcactcggactgggctacatggttaccattagcggaatacgcctacaacaat
gctaaacattccgccaccggaaaaaccccctttgagttagtctacggaagaaatcccgtg
atgagcccatccaacgtgccaacaaacataccagaagctgaccacgtggctgataccctg
gcccaggaatggaaagaggcagaatccgctctacgaatgacaaaggaaaagatggcagga
ttaaaaggaatcacaccggagtactccattggcgaaaaagtctggctggacggaaaaaat
gtggaactacgaaccaactccaataaactagacccaaggaggttaggaccatttgaaatc
ctagaaaagatctccagccacgcctattgtctgaaattaccggagaccctgaagatccac
gacgtattctacgtggggttattgtccaaagtccacgaaagcccaagccagccattccca
gaacgacctccccctgaaacaatagagggagaagaggaatacaaagtagaacaaatcatt
gactccaaaagacaacggggcaaatggttttacctaatcaaatggaagggatatggaccc
gaagataactcgtgggaaccagaggaactacttgagcatagtcaggaggagatccaacgc
ttcaacaagtcgcgactgaaaaaggcttgtgactccgccaagagcctttaa
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