Rhizoctonia solani: RhiXN_12085
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Entry
RhiXN_12085 CDS
T09256
Name
(RefSeq) Retrotransposable element Tf2 protein
Organism
rsx
Rhizoctonia solani
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
Integrase_H2C2
Chromo
rve
zf-H2C2
Motif
Other DBs
NCBI-GeneID:
67034363
NCBI-ProteinID:
XP_043186661
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Position
15:910126..913317
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AA seq
1063 aa
AA seq
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MLDGSSPQAGKIWKKAHLTFLFDGKRMTETFLICNTGSHAAILGIKWLENHNPEIDWNTR
TLSFPHTPPEHVAIAKEEEADKNPLEGVPPEYHQYAKVFGEEEFNKLPPHRHYDIGIELT
KEGPLNSPLYSMTDAESATLKDWLRDELKAGKIRPSKSSISSPVMFVPKKDGSRRLVVDY
RRLNNRTKKNVYPLPRPDDLMAQLRGAKVFTKLDLRWGYNNVRVKEGDEWKTAFRTKYGL
YESLVMTFGLTNAPAAFQHFMNELFKDLLDVCVIIYLDDILIYSKDDASHTQHVHEVLRR
LMENQLFCKASKRTFHVTSVEYLGIIVLDKGFSLDKLKIQAVQEWPTPTKVKEVQSFLGF
ANFLRRFVANFSHTARPLHNLVKKDTPWKWDTKEQEAFQGLKDAITNAPVLCHADPTKPY
FLETDASGAALGSILSQRQEDGRLHPLGFLSESFKGAEQNYDTHNKELLAIIRSFEYWRI
FLEGTAHPITVFTDHRNLEYWKESRTFNRRHARWHLLLAGYNFQIVYCPGKQSGKPDALS
RRSDHADIPPANQTMLPNPVFANVALVTPEKELQRQIEASLDQDESLEEILQFLQNKSRA
PPSIKRAFKDYEMEAGLLFYQGRIVVPDVGTLRTDLLRIFHDSPLAGHPGRQRTLELVSR
NYYWPGIRADTYWHVDSCETCQRIRKPKYASIPPQPLELPVRPWQHVSYDMIVDLPKDGT
NDSILVIVDSFTKYGIFVKCSKKLKAPELADLFLEHVWKRHGMPEKTVSDRGRVFNNKFL
KALYKRLGIDPHFLSAYHPQSDGQTERVNPSIEHFLRAYSGVNQRDWTKWLPMAEFAYNN
AVHSSTGKTPFKALYGWEPTLTPSNVPTDVPEADDLAQTMEAQWKEVESALRQSKQRMTA
GEEGSPAEFEIGEEAWLDAKNVNLKTLSPKLTEQRLGPFKVIEKISDRAYRLELPPTMRI
HNVFYVGLLSKVKRDSKRTFENCPPPVTVDGEEEYEVEGITDAEERNGKWFFRVKWKGYG
SEENTWEPRENLKNAEKILEKYEKEMKKKALGAAKALRGGAVS
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgctcgatgggtcgagcccccaggctggaaagatttggaaaaaggcccacctaaccttc
ctatttgatggcaaacgcatgacggaaaccttcctgatttgcaataccggatcacacgct
gccatcttaggaattaaatggttagagaaccacaaccccgaaatcgattggaacacgcgc
accctctcattccctcacacgcccccggaacacgtagccattgccaaagaggaagaagcg
gacaagaatcctcttgaaggagtaccccccgagtaccatcaatatgccaaggtatttggg
gaagaagaattcaataagcttcctccccaccggcactatgacattgggattgaacttacc
aaagaaggccccctcaattcgcccctttatagtatgacagacgccgagtccgccacactc
aaggactggctcagggacgagttgaaagccgggaaaatccgcccaagcaaatcttctatc
agttcccctgtgatgtttgttcccaagaaggatggttcccgtcgcttggttgtcgactat
cgtcgccttaacaacaggacaaagaaaaatgtgtacccgttaccccgtccagatgacctc
atggcccagctccgtggtgccaaggtcttcactaagctagatctaagatggggttacaac
aatgtccgtgtcaaggagggtgacgaatggaaaactgccttccgcaccaagtatggattg
tatgaatccctagtcatgacgtttggtctaaccaatgcccccgccgcctttcaacatttc
atgaacgaactgttcaaagacttgcttgatgtatgcgtcatcatttaccttgatgacatc
ctaatctactccaaggatgacgcgtcacacactcagcacgttcatgaggtcctacgccgg
ttaatggaaaaccagttgttctgcaaggcttccaaacgtaccttccacgttacctcggtg
gagtacctagggatcattgtattggataagggatttagcctggataagctcaaaatccag
gcagtccaggaatggccaacgccaaccaaagtcaaggaagtccaatctttcctagggttt
gctaatttcttgcgccgatttgttgccaactttagtcacacggctagacccttacataac
ctggtcaaaaaggatacgccttggaaatgggatacaaaggaacaggaagcattccaagga
ctaaaagatgccatcaccaacgcccccgtgttatgccacgcagaccctaccaagccttac
ttcctcgaaacagacgcgtctggtgctgccctgggttctatacttagccaacgccaagaa
gatgggcgcctccatccgctcggtttcctatccgaatccttcaagggagctgagcagaac
tatgacacacacaataaggagctcctggcaattatccgttcctttgagtattggcgtata
ttcctggaaggcactgcacaccccattactgtctttacggatcaccgcaacttggaatac
tggaaagagtcccggacattcaaccggcgtcacgcacgttggcatttacttcttgccggg
tacaatttccaaatagtctattgtccagggaaacaatccgggaagccggacgccctttca
cgccgctcagaccatgccgatatacctcctgccaaccagaccatgctccccaaccctgtc
tttgccaacgtagcgctagtcacacctgagaaggaactccagcgccaaattgaggccagc
ctagaccaagacgaatccctggaagaaatattgcaattcctccagaacaagtccagggca
cccccatccatcaaacgagcattcaaggattacgagatggaggccgggctactcttttac
caaggacgaatcgtggtccctgatgtcggaaccctgagaacagacctactacgcatattc
cacgatagcccactagctggccacccaggcagacaacggacattagaattagtgtccagg
aactattactggcccggtatccgtgctgacacctattggcatgttgattcatgtgaaacc
tgccaacggatccggaaacccaagtacgcctccatcccgccgcagccgcttgaactcccc
gttaggccctggcaacacgtgtcttacgacatgatagtagacctgcccaaggacgggacc
aatgactctatcttggtcatagtcgacagcttcacaaagtatgggatttttgtcaaatgt
tccaagaagctgaaggcacccgaactagcggacttattcttggaacacgtatggaaacgg
cacggtatgccggaaaagacagtctcagataggggaagggtattcaataacaagttcctt
aaggcactgtacaaacgcctaggcattgacccgcacttcttgtcggcttatcatccacaa
agcgacggtcaaaccgagcgggtcaacccctccatcgaacatttcctaagggcctactcg
ggagttaaccaaagggactggaccaaatggctccctatggcggaatttgcatacaataat
gccgtacacagcagcacaggcaaaacccccttcaaggccctttatggttgggaacctacc
ttaaccccatcaaacgtgccaaccgatgtccctgaagcagacgatcttgcccaaactatg
gaagctcagtggaaagaagtggaatcagcactccggcaatccaaacaacgtatgacagcc
ggagaggagggaagcccagcggaatttgaaattggagaagaagcttggctagacgccaag
aatgtcaacctcaaaacactgagtcccaaactaacggagcaacgcttgggacccttcaaa
gtaattgagaaaatctccgaccgagcttaccgcctggaacttcccccaactatgcgaatc
cacaacgtcttctatgtaggacttctgtctaaagtcaaaagggacagtaaacgtaccttt
gaaaattgtcccccacctgtcaccgtggacggagaagaagaatacgaggtagaagggatc
accgatgctgaagaaaggaatggaaaatggttcttccgagtcaaatggaagggatacggg
tccgaggaaaacacatgggagccccgagaaaacttaaaaaatgccgaaaaaattttagaa
aaatacgaaaaagagatgaaaaagaaggccctcggcgctgccaaggcccttagagggggg
gcagtgtcgtag
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